RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PRELID3AQ96N28 172 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 DUX3Q96PT4 197 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 TMEM191AQ9H0A3 160 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 NPYP01303 97 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 RAB4AP20338 218 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 ADAMTSL5Q6ZMM2 481 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 ORMDL3Q8N138 153 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 SIGLEC8Q9NYZ4 499 aa10.87□□□□□ -0.67
VRK3-217ENST00000599538 FASNP49327 2511 aaKnown RBP10.86□□□□□ -0.67
VRK3-217ENST00000599538 ZNF688P0C7X2 276 aa10.86□□□□□ -0.67
VRK3-217ENST00000599538 EVI2AP22794 236 aa10.86□□□□□ -0.67
VRK3-217ENST00000599538 RNASE4P34096 147 aaKnown RBP10.86□□□□□ -0.67
VRK3-217ENST00000599538 SLURP1P55000 103 aa10.86□□□□□ -0.67
VRK3-217ENST00000599538 MAJINQ3KP22 176 aa10.86□□□□□ -0.67
VRK3-217ENST00000599538 TIMM8BQ9Y5J9 83 aaPredicted RBP10.86□□□□□ -0.67
VRK3-217ENST00000599538 H3BVH4 76 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 CKS2P33552 79 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 REC114Q7Z4M0 266 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 PRSS3P2Q8NHM4 247 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 VAMP8Q9BV40 100 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 ESM1Q9NQ30 184 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 SETD2Q9BYW2 2564 aaPredicted RBP10.85□□□□□ -0.67
VRK3-217ENST00000599538 GATA1P15976 413 aaPredicted RBP10.85□□□□□ -0.67
VRK3-217ENST00000599538 BTF3P20290 206 aaKnown RBP10.85□□□□□ -0.67
VRK3-217ENST00000599538 FXYD7P58549 80 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 NDUFAF3Q9BU61 184 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 MCRIP2Q9BUT9 160 aaKnown RBP10.85□□□□□ -0.67
VRK3-217ENST00000599538 AP5S1Q9NUS5 200 aa10.85□□□□□ -0.67
VRK3-217ENST00000599538 HECTD1Q9ULT8 2610 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 DNAJC9-AS1A6NH13 148 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 LEPROTL1O95214 131 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 ANXA2RQ3ZCQ2 193 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 PSMG4Q5JS54 123 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 DMRTA1Q5VZB9 504 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 Q6ZSV7 163 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 A0A096LNJ9 63 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 LGALS9O00182 355 aa10.84□□□□□ -0.67
VRK3-217ENST00000599538 TRAV21A0A0B4J279 112 aa10.83□□□□□ -0.68
VRK3-217ENST00000599538 K7EQG2 157 aa10.83□□□□□ -0.68
VRK3-217ENST00000599538 GNRH2O43555 120 aa10.83□□□□□ -0.68
VRK3-217ENST00000599538 SNAI2O43623 268 aa10.83□□□□□ -0.68
VRK3-217ENST00000599538 OR5AL1P0C617 328 aa10.83□□□□□ -0.68
VRK3-217ENST00000599538 FA2HQ7L5A8 372 aa10.83□□□□□ -0.68
VRK3-217ENST00000599538 APRG1Q8IVJ8 170 aa10.83□□□□□ -0.68
VRK3-217ENST00000599538 IGKV3-20P01619 116 aa10.82□□□□□ -0.68
VRK3-217ENST00000599538 ID1P41134 155 aa10.82□□□□□ -0.68
VRK3-217ENST00000599538 C20orf144Q9BQM9 153 aa10.82□□□□□ -0.68
VRK3-217ENST00000599538 TMEM70Q9BUB7 260 aa10.82□□□□□ -0.68
VRK3-217ENST00000599538 KHDC1LQ5JSQ8 128 aa10.82□□□□□ -0.68
VRK3-217ENST00000599538 SPANXN1Q5VSR9 72 aa10.82□□□□□ -0.68
VRK3-217ENST00000599538 OR11H1Q8NG94 326 aa10.82□□□□□ -0.68
VRK3-217ENST00000599538 ANK3Q12955 4377 aaKnown RBP10.82□□□□□ -0.68
VRK3-217ENST00000599538 TRAV26-2A0A0B4J265 109 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 SYS1-DBNDD2H3BUS1 97 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 SPATA45Q537H7 98 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 KLLNB2CW77 178 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 H0Y8G0 127 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 C11orf44Q8N8P7 122 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 YAE1D1Q9NRH1 226 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 MUC4Q99102 2169 aa10.81□□□□□ -0.68
VRK3-217ENST00000599538 WNK1Q9H4A3 2382 aa10.8□□□□□ -0.68
VRK3-217ENST00000599538 IGHV4-4A0A075B6R2 117 aa10.8□□□□□ -0.68
VRK3-217ENST00000599538 CRXO43186 299 aaPredicted RBP10.8□□□□□ -0.68
VRK3-217ENST00000599538 A0A0J9YX75 114 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 M0R381 172 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 TCF21O43680 179 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 LURAP1LQ8IV03 231 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 TMEM86BQ8N661 226 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 TRAV12-2A0A075B6T6 113 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 TNFRSF6BO95407 300 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 RNASE3P12724 160 aaKnown RBP10.79□□□□□ -0.68
VRK3-217ENST00000599538 S100A4P26447 101 aaKnown RBP10.79□□□□□ -0.68
VRK3-217ENST00000599538 FOXC2Q99958 501 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 PMCHL2Q9BQD1 86 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 ZNF747Q9BV97 191 aa10.79□□□□□ -0.68
VRK3-217ENST00000599538 TRAV12-3A0A0B4J271 114 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 TRBV7-9A0A0J9YWB2 115 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 LINC01619G3V211 115 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 EREGO14944 169 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 SNRPD3P62318 126 aaKnown RBP10.78□□□□□ -0.68
VRK3-217ENST00000599538 ZNF705AQ6ZN79 300 aaPredicted RBP10.78□□□□□ -0.68
VRK3-217ENST00000599538 KLHL30-AS1Q8NEE0 82 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 C4orf3Q8WVX3 66 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 DLX4Q92988 240 aaPredicted RBP10.78□□□□□ -0.68
VRK3-217ENST00000599538 MIEN1Q9BRT3 115 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 NOTCH2Q04721 2471 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 CD5LO43866 347 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 ASIPP42127 132 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 OR1N2Q8NGR9 330 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 SMR3AQ99954 134 aa10.78□□□□□ -0.68
VRK3-217ENST00000599538 OR4C46A6NHA9 309 aa10.77□□□□□ -0.69
VRK3-217ENST00000599538 PPBPP02775 128 aa10.77□□□□□ -0.69
VRK3-217ENST00000599538 SAMD13Q5VXD3 122 aa10.77□□□□□ -0.69
VRK3-217ENST00000599538 IGLL1P15814 213 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 CACNG7P62955 275 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 DPF1Q92782 380 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 SNHG12Q9BXW3 62 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 MAP1LC3CQ9BXW4 147 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 MAP1LC3AQ9H492 121 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 SCRT2Q9NQ03 307 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms