RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SPINK13Q1W4C9 94 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 ADAMTSL5Q6ZMM2 481 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 NUP35Q8NFH5 326 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 C20orf144Q9BQM9 153 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 PYGO2Q9BRQ0 406 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 TMEM208Q9BTX3 173 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 GNB1LQ9BYB4 327 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 CHTOPQ9Y3Y2 248 aaKnown RBP4.62□□□□□ -1.67
LIG3-206ENST00000586058 NSD1Q96L73 2696 aaPredicted RBP4.62□□□□□ -1.67
LIG3-206ENST00000586058 MXRA5Q9NR99 2828 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 AKAP9Q99996 3911 aa4.62□□□□□ -1.67
LIG3-206ENST00000586058 SVEP1Q4LDE5 3571 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 F8P00451 2351 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 TRAV12-3A0A0B4J271 114 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 KNCNA6PVL3 124 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 KLLNB2CW77 178 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 M0R2Z0 102 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 CD7P09564 240 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 TRGC1P0CF51 173 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 SMIM17P0DL12 118 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 MED14OSP0DP75 135 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 CAMPP49913 170 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 KRTAP10-3P60369 221 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 GDF5OSQ5U4N7 250 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 SPANXN1Q5VSR9 72 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 MORN3Q6PF18 240 aaPredicted RBP4.61□□□□□ -1.67
LIG3-206ENST00000586058 LINC00322Q6ZN03 302 aaPredicted RBP4.61□□□□□ -1.67
LIG3-206ENST00000586058 APRG1Q8IVJ8 170 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 TMEM256Q8N2U0 113 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 SYT8Q8NBV8 401 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 MRPL18Q9H0U6 180 aaKnown RBP4.61□□□□□ -1.67
LIG3-206ENST00000586058 ZNF256Q9Y2P7 627 aaPredicted RBP4.61□□□□□ -1.67
LIG3-206ENST00000586058 PHLDA3Q9Y5J5 127 aa4.61□□□□□ -1.67
LIG3-206ENST00000586058 AGRNO00468 2067 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 FN1P02751 2386 aaKnown RBP4.6□□□□□ -1.67
LIG3-206ENST00000586058 IGHV1OR15-1A0A075B7D0 117 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 CBY3A6NI87 242 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 H3BMM0 161 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 H3BVH4 76 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 APCSP02743 223 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 TRGC2P03986 189 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 GZMBP10144 247 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 CTRLP40313 264 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 ZNF80P51504 273 aaPredicted RBP4.6□□□□□ -1.67
LIG3-206ENST00000586058 DEFB1P60022 68 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 ZNF415Q09FC8 603 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 FABP9Q0Z7S8 132 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 TWIST1Q15672 202 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 ODF3L2Q3SX64 289 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 PRR31Q5SQ13 230 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 MUC21Q5SSG8 566 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 GFI1BQ5VTD9 330 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 LYZL1Q6UWQ5 148 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 ZFP82Q8N141 532 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 ZFAND2AQ8N6M9 145 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 FAM19A4Q96LR4 140 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 YPEL4Q96NS1 127 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 AP1S3Q96PC3 154 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 KRTAP9-4Q9BYQ2 154 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 GOLT1BQ9Y3E0 138 aa4.6□□□□□ -1.67
LIG3-206ENST00000586058 TIMM8BQ9Y5J9 83 aaPredicted RBP4.6□□□□□ -1.67
LIG3-206ENST00000586058 TRAV12-2A0A075B6T6 113 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 GRIFINA4D1Z8 144 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 CYSRT1A8MQ03 144 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 OR5AL1P0C617 328 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 ARMS2P0C7Q2 107 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 S100A2P29034 98 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 CRIP1P50238 77 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 APOC4P55056 127 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 FOXA3P55318 350 aaPredicted RBP4.59□□□□□ -1.67
LIG3-206ENST00000586058 BEAN1Q3B7T3 259 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 ANXA2RQ3ZCQ2 193 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 TRPT1Q86TN4 253 aaKnown RBP4.59□□□□□ -1.67
LIG3-206ENST00000586058 GTSF1Q8WW33 167 aa4.59□□□□□ -1.67
LIG3-206ENST00000586058 IGKV3D-20A0A0C4DH25 116 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 A8MTW9 85 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 M0R381 172 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 IGLC6P0CF74 106 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 HTN1P15515 57 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 IGLL1P15814 213 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 FXYD7P58549 80 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 TDRG1Q3Y452 100 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 PRR9Q5T870 116 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 TMEM136Q6ZRR5 245 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 LINC01587Q99440 93 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 MTORP42345 2549 aa4.58□□□□□ -1.68
LIG3-206ENST00000586058 HIVEP1P15822 2718 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 IGHV3OR16-12A0A075B7B8 117 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 LOC102724200A0A096LPH7 203 aaPredicted RBP4.57□□□□□ -1.68
LIG3-206ENST00000586058 A0A1B0GXF2 115 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 SNAI2O43623 268 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 PPBPP02775 128 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 RPL35AP18077 110 aaKnown RBP4.57□□□□□ -1.68
LIG3-206ENST00000586058 NTF3P20783 257 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 SRIP30626 198 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 NDUFA6P56556 154 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 SSTP61278 116 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 ZNF124Q15973 351 aa4.57□□□□□ -1.68
LIG3-206ENST00000586058 OR10J3Q5JRS4 329 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms