RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 RAXQ9Y2V3 346 aa13.08□□□□□ -0.32
VPS53-215ENST00000573028 RBAKDNA6NC62 111 aa13.07□□□□□ -0.32
VPS53-215ENST00000573028 UBE2E1P51965 193 aa13.07□□□□□ -0.32
VPS53-215ENST00000573028 ATP5G2Q06055 141 aa13.07□□□□□ -0.32
VPS53-215ENST00000573028 MGPP08493 103 aa13.07□□□□□ -0.32
VPS53-215ENST00000573028 NPFFR1Q9GZQ6 430 aa13.06□□□□□ -0.32
VPS53-215ENST00000573028 IGHV3-11P01762 117 aa13.06□□□□□ -0.32
VPS53-215ENST00000573028 SRSF1Q07955 248 aaKnown RBP eCLIP13.06□□□□□ -0.327e-9■■□□□ 13.7
VPS53-215ENST00000573028 C14orf178Q8N769 122 aaPredicted RBP13.06□□□□□ -0.32
VPS53-215ENST00000573028 OR5A1Q8NGJ0 315 aa13.06□□□□□ -0.32
VPS53-215ENST00000573028 CENPVL3A0A0U1RRI6 287 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 NBL1P41271 181 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 LCNL1Q6ZST4 164 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 MTURNQ8N3F0 131 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 C20orf173Q96LM9 149 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 HIST1H4GQ99525 98 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.05□□□□□ -0.32
VPS53-215ENST00000573028 TRBV12-3P01733 135 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 BRD3OSQ6XYD6 125 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 AJUBAQ96IF1 538 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 CEND1Q8N111 149 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 RPL39LQ96EH5 51 aaKnown RBP13.05□□□□□ -0.32
VPS53-215ENST00000573028 SMPXQ9UHP9 88 aa13.05□□□□□ -0.32
VPS53-215ENST00000573028 F6UB75 175 aa13.04□□□□□ -0.32
VPS53-215ENST00000573028 UNQ9165/PRO28630Q6UXU0 137 aa13.04□□□□□ -0.32
VPS53-215ENST00000573028 G3V4G9 280 aa13.04□□□□□ -0.32
VPS53-215ENST00000573028 NPFFO15130 113 aa13.04□□□□□ -0.32
VPS53-215ENST00000573028 SCGB3A1Q96QR1 104 aa13.04□□□□□ -0.32
VPS53-215ENST00000573028 TRBV7-1A0A0A6YYK4 115 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 HIGD1BQ9P298 99 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 A0A087WX48 190 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 LINC01546A6NGU7 62 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 ARL3P36405 182 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 LY6EQ16553 131 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 PHLDA3Q9Y5J5 127 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 TRAV41A0A0B4J266 112 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 KLRB1Q12918 225 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 C9orf47Q6ZRZ4 202 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 WFDC12Q8WWY7 111 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 SMIM2Q9BVW6 85 aa13.03□□□□□ -0.32
VPS53-215ENST00000573028 TEX48A0A1B0GUV7 120 aa13.02□□□□□ -0.32
VPS53-215ENST00000573028 AMTNQ6UX39 209 aa13.02□□□□□ -0.32
VPS53-215ENST00000573028 NEGR1Q7Z3B1 354 aa13.02□□□□□ -0.32
VPS53-215ENST00000573028 SRD5A1P18405 259 aa13.02□□□□□ -0.33
VPS53-215ENST00000573028 RNASE4P34096 147 aaKnown RBP13.02□□□□□ -0.33
VPS53-215ENST00000573028 C5orf56Q8N8D9 126 aa13.02□□□□□ -0.33
VPS53-215ENST00000573028 PIFOQ8TCI5 191 aa13.02□□□□□ -0.33
VPS53-215ENST00000573028 SCGB2A2Q13296 93 aa13.01□□□□□ -0.33
VPS53-215ENST00000573028 OR10J6PQ8NGY7 276 aa13.01□□□□□ -0.33
VPS53-215ENST00000573028 CSPG4Q6UVK1 2322 aa13□□□□□ -0.33
VPS53-215ENST00000573028 ZNF479Q96JC4 524 aa13□□□□□ -0.33
VPS53-215ENST00000573028 CYSLTR1Q9Y271 337 aa13□□□□□ -0.33
VPS53-215ENST00000573028 CHTOPQ9Y3Y2 248 aaKnown RBP13□□□□□ -0.33
VPS53-215ENST00000573028 OR11H12B2RN74 326 aa13□□□□□ -0.33
VPS53-215ENST00000573028 GNRH2O43555 120 aa13□□□□□ -0.33
VPS53-215ENST00000573028 SUMO2P61956 95 aaKnown RBP13□□□□□ -0.33
VPS53-215ENST00000573028 ANXA2RQ3ZCQ2 193 aa13□□□□□ -0.33
VPS53-215ENST00000573028 OR11H1Q8NG94 326 aa13□□□□□ -0.33
VPS53-215ENST00000573028 OR11H2Q8NH07 326 aa13□□□□□ -0.33
VPS53-215ENST00000573028 CREBBPQ92793 2442 aa13□□□□□ -0.33
VPS53-215ENST00000573028 H3BMG7 143 aa13□□□□□ -0.33
VPS53-215ENST00000573028 LMO4P61968 165 aa13□□□□□ -0.33
VPS53-215ENST00000573028 EMP1P54849 157 aa12.99□□□□□ -0.33
VPS53-215ENST00000573028 PSMG4Q5JS54 123 aa12.99□□□□□ -0.33
VPS53-215ENST00000573028 SFTA2Q6UW10 78 aa12.99□□□□□ -0.33
VPS53-215ENST00000573028 H7C1H1 209 aa12.99□□□□□ -0.33
VPS53-215ENST00000573028 PLNP26678 52 aa12.99□□□□□ -0.33
VPS53-215ENST00000573028 PHLDA1Q8WV24 401 aaPredicted RBP12.99□□□□□ -0.33
VPS53-215ENST00000573028 TM2D2Q9BX73 214 aa12.99□□□□□ -0.33
VPS53-215ENST00000573028 IGLL5B9A064 214 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 F8VRH5 84 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 ASIPP42127 132 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 WFDC2Q14508 124 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 C12orf74Q32Q52 190 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 C9orf139Q6ZV77 190 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 RASL10AQ92737 203 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 ZFAND2AQ8N6M9 145 aa12.98□□□□□ -0.33
VPS53-215ENST00000573028 TRAV21A0A0B4J279 112 aa12.97□□□□□ -0.33
VPS53-215ENST00000573028 MRPL53Q96EL3 112 aaKnown RBP12.97□□□□□ -0.33
VPS53-215ENST00000573028 MRAP2Q96G30 205 aa12.97□□□□□ -0.33
VPS53-215ENST00000573028 U3KQE9 123 aa12.97□□□□□ -0.33
VPS53-215ENST00000573028 PF4V1P10720 104 aa12.97□□□□□ -0.33
VPS53-215ENST00000573028 C2orf66Q6UXQ4 117 aa12.97□□□□□ -0.33
VPS53-215ENST00000573028 SORL1Q92673 2214 aa12.97□□□□□ -0.33
VPS53-215ENST00000573028 MOB4Q9Y3A3 225 aa12.96□□□□□ -0.33
VPS53-215ENST00000573028 DOPEY2Q9Y3R5 2298 aa12.96□□□□□ -0.33
VPS53-215ENST00000573028 LY6DQ14210 128 aa12.96□□□□□ -0.33
VPS53-215ENST00000573028 ORMDL2Q53FV1 153 aa12.96□□□□□ -0.33
VPS53-215ENST00000573028 DPH3P1Q9H4G8 78 aa12.96□□□□□ -0.33
VPS53-215ENST00000573028 SH2D6Q7Z4S9 175 aa12.96□□□□□ -0.34
VPS53-215ENST00000573028 GPHB5Q86YW7 130 aa12.96□□□□□ -0.34
VPS53-215ENST00000573028 SCGB1D4Q6XE38 83 aa12.95□□□□□ -0.34
VPS53-215ENST00000573028 LINC00477Q96M19 166 aa12.95□□□□□ -0.34
VPS53-215ENST00000573028 VPS13CQ709C8 3753 aa12.95□□□□□ -0.34
VPS53-215ENST00000573028 ETDBQ3ZM63 59 aa12.95□□□□□ -0.34
VPS53-215ENST00000573028 IGHV4-4A0A075B6R2 117 aa12.94□□□□□ -0.34
VPS53-215ENST00000573028 E9PLD3 99 aa12.94□□□□□ -0.34
VPS53-215ENST00000573028 HLA-DRB4P13762 266 aa12.94□□□□□ -0.34
VPS53-215ENST00000573028 CD300EQ496F6 205 aaPredicted RBP12.94□□□□□ -0.34
VPS53-215ENST00000573028 ITLN2Q8WWU7 325 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms