RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 TMEM75Q8N9X5 138 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 C16orf74Q96GX8 76 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 C8orf49Q96NF6 230 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 YPEL4Q96NS1 127 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 PYGO2Q9BRQ0 406 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 NDFIP1Q9BT67 221 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 DKK2Q9UBU2 259 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 TENM2Q9NT68 2774 aa10.26□□□□□ -0.77
USP3-221ENST00000561442 TMEM241Q24JQ0 296 aa10.25□□□□□ -0.77
USP3-221ENST00000561442 MUC21Q5SSG8 566 aa10.25□□□□□ -0.77
USP3-221ENST00000561442 Q6ZTC4 211 aa10.25□□□□□ -0.77
USP3-221ENST00000561442 RNASE8Q8TDE3 154 aaKnown RBP10.25□□□□□ -0.77
USP3-221ENST00000561442 PHLDA1Q8WV24 401 aaPredicted RBP10.25□□□□□ -0.77
USP3-221ENST00000561442 BTF3L4Q96K17 158 aa10.25□□□□□ -0.77
USP3-221ENST00000561442 LYSTQ99698 3801 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 IGHV1OR15-1A0A075B7D0 117 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 SCO2A0A1W2PP80 73 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 PLAC8L1A1L4L8 177 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 CBY3A6NI87 242 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 C11orf94C9JXX5 98 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 CEBPGP53567 150 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 ZNF493Q6ZR52 646 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 TMEM263Q8WUH6 116 aaKnown RBP10.24□□□□□ -0.77
USP3-221ENST00000561442 ANAPC16Q96DE5 110 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 SMIM7Q9BQ49 75 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 NAGKQ9UJ70 344 aa10.24□□□□□ -0.77
USP3-221ENST00000561442 AKR1C3P42330 323 aa10.23□□□□□ -0.77
USP3-221ENST00000561442 Q6AWC8 147 aa10.23□□□□□ -0.77
USP3-221ENST00000561442 Q86TA4 180 aa10.23□□□□□ -0.77
USP3-221ENST00000561442 TCEAL7Q9BRU2 100 aa10.23□□□□□ -0.77
USP3-221ENST00000561442 NOP10Q9NPE3 64 aaKnown RBP10.23□□□□□ -0.77
USP3-221ENST00000561442 TP53TG3Q9ULZ0 132 aa10.23□□□□□ -0.77
USP3-221ENST00000561442 KMT2CQ8NEZ4 4911 aaKnown RBP10.23□□□□□ -0.77
USP3-221ENST00000561442 FBLL1A6NHQ2 334 aaKnown RBP10.22□□□□□ -0.77
USP3-221ENST00000561442 PPP1R2P9O14990 202 aa10.22□□□□□ -0.77
USP3-221ENST00000561442 GCGP01275 180 aa10.22□□□□□ -0.77
USP3-221ENST00000561442 ZNF80P51504 273 aaPredicted RBP10.22□□□□□ -0.77
USP3-221ENST00000561442 UBE2G1P62253 170 aa10.22□□□□□ -0.77
USP3-221ENST00000561442 CEMP1Q6PRD7 247 aaPredicted RBP10.22□□□□□ -0.77
USP3-221ENST00000561442 LINC00467Q9BRT7 94 aa10.22□□□□□ -0.77
USP3-221ENST00000561442 PARLQ9H300 379 aa10.22□□□□□ -0.77
USP3-221ENST00000561442 GSN-AS1Q9NRJ2 163 aa10.22□□□□□ -0.77
USP3-221ENST00000561442 TIMM8BQ9Y5J9 83 aaPredicted RBP10.22□□□□□ -0.77
USP3-221ENST00000561442 SACSQ9NZJ4 4579 aa10.22□□□□□ -0.77
USP3-221ENST00000561442 ALMS1Q8TCU4 4167 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 TRBV24-1A0A075B6N3 115 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 TRAV21A0A0B4J279 112 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 TEX48A0A1B0GUV7 120 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 NUPR2A6NF83 97 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 LYRM9A8MSI8 78 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 SNURFLB1AK76 121 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 S100A6P06703 90 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 DEFB130BP0DP73 79 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 DEFB130AP0DP74 79 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 HTN3P15516 51 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 DAD1P61803 113 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 ELOBQ15370 118 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 ANXA2RQ3ZCQ2 193 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 SMUG1Q53HV7 270 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 SAPCD1Q5SSQ6 148 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 FMC1Q96HJ9 113 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 LY96Q9Y6Y9 160 aa10.21□□□□□ -0.77
USP3-221ENST00000561442 DNAH1Q9P2D7 4330 aa10.21□□□□□ -0.78
USP3-221ENST00000561442 TRAV10A0A0B4J240 114 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 S100PP25815 95 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 TMEM183BQ1AE95 376 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 FAM159AQ6UWV7 190 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 TMEM183AQ8IXX5 376 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 C11orf72Q8NBR9 251 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 C2CD4CQ8TF44 421 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 ISOC2Q96AB3 205 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 IMMP2LQ96T52 175 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 KLF12Q9Y4X4 402 aa10.2□□□□□ -0.78
USP3-221ENST00000561442 DEFB131BA0A096LNP1 70 aa10.19□□□□□ -0.78
USP3-221ENST00000561442 RPL23P62829 140 aaKnown RBP10.19□□□□□ -0.78
USP3-221ENST00000561442 NHLRC2Q8NBF2 726 aa10.19□□□□□ -0.78
USP3-221ENST00000561442 C11orf52Q96A22 123 aa10.19□□□□□ -0.78
USP3-221ENST00000561442 C11orf21Q9P2W6 132 aa10.19□□□□□ -0.78
USP3-221ENST00000561442 KLK5Q9Y337 293 aaPredicted RBP10.19□□□□□ -0.78
USP3-221ENST00000561442 TRBV6-1A0A0K0K1D8 114 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 GAGE12BA1L429 117 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 GNRH2O43555 120 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 GAGE7O76087 117 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 LTAP01374 205 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 S100A8P05109 93 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 PFN1P07737 140 aaKnown RBP10.18□□□□□ -0.78
USP3-221ENST00000561442 GAGE12FP0CL80 117 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 GAGE12GP0CL81 117 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 GAGE12IP0CL82 117 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 ADIRFQ15847 76 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 ZC2HC1AQ96GY0 325 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 DERL1Q9BUN8 251 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 MDFICQ9P1T7 246 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 ZFP30Q9Y2G7 519 aa10.18□□□□□ -0.78
USP3-221ENST00000561442 TRGV11A0A075B6L2 103 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 C5orf52A6NGY3 159 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 IGLL5B9A064 214 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 C9JCJ5 164 aa10.17□□□□□ -0.78
USP3-221ENST00000561442 S100A9P06702 114 aaKnown RBP10.17□□□□□ -0.78
USP3-221ENST00000561442 RPL35P42766 123 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms