RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 PSMB8P28062 276 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 HSPE1P61604 102 aaKnown RBP2.36□□□□□ -2.03
VPS13C-210ENST00000561258 C3orf33Q6P1S2 294 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 LYZL1Q6UWQ5 148 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 STX12Q86Y82 276 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 Q8NDZ9 215 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 GNPDA2Q8TDQ7 276 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 C11orf40Q8WZ69 217 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 TMEM106BQ9NUM4 274 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 DNAH11Q96DT5 4516 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 PKD1P98161 4303 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 FAT2Q9NYQ8 4349 aa2.36□□□□□ -2.03
VPS13C-210ENST00000561258 APOBP04114 4563 aaKnown RBP2.35□□□□□ -2.03
VPS13C-210ENST00000561258 DYNC1H1Q14204 4646 aaKnown RBP2.35□□□□□ -2.03
VPS13C-210ENST00000561258 IRGMA1A4Y4 181 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 NPFFO15130 113 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 IFNA10P01566 189 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 PPIBP23284 216 aaKnown RBP2.35□□□□□ -2.03
VPS13C-210ENST00000561258 G6PCP35575 357 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 ZNF80P51504 273 aaPredicted RBP2.35□□□□□ -2.03
VPS13C-210ENST00000561258 SARNPP82979 210 aaKnown RBP2.35□□□□□ -2.03
VPS13C-210ENST00000561258 ZNF90Q03938 601 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 KISS1Q15726 138 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 GOLT1AQ6ZVE7 132 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 AAED1Q7RTV5 226 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 GID8Q9NWU2 228 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 NDUFB11Q9NX14 153 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 PRO2289Q9P1D8 64 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 ASB4Q9Y574 426 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 TIMM9Q9Y5J7 89 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 SORL1Q92673 2214 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 HMCN2Q8NDA2 5059 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 DNAH2Q9P225 4427 aa2.35□□□□□ -2.03
VPS13C-210ENST00000561258 IGHV3-64A0A075B6Q5 118 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 TRAV41A0A0B4J266 112 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 TRAPPC13A5PLN9 417 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 H7C2G1 150 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 C1QBP02746 253 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 DEFA4P12838 97 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 OGNP20774 298 aaKnown RBP2.34□□□□□ -2.03
VPS13C-210ENST00000561258 SERPINB1P30740 379 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 B2MP61769 119 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 VMO1Q7Z5L0 202 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 Q8N2B8 174 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 SLC25A40Q8TBP6 338 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 NEK7Q8TDX7 302 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 RASSF5Q8WWW0 418 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 MRPS24Q96EL2 167 aaKnown RBP2.34□□□□□ -2.03
VPS13C-210ENST00000561258 DNAJC30Q96LL9 226 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 HOPXQ9BPY8 73 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-210ENST00000561258 EFCAB11Q9BUY7 163 aa2.34□□□□□ -2.03
VPS13C-210ENST00000561258 VPS13DQ5THJ4 4388 aa2.34□□□□□ -2.04
VPS13C-210ENST00000561258 TANC2Q9HCD6 1990 aa2.34□□□□□ -2.04
VPS13C-210ENST00000561258 IGLV3-9A0A075B6K5 115 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 TRAV38-1A0A0B4J264 116 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 FNDC10F2Z333 226 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 BUB1B-PAK6H3BSN5 160 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 APOC4-APOC2K7ER74 178 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 APOC2P02655 101 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 SMIM17P0DL12 118 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 ERP29P30040 261 aaKnown RBP2.33□□□□□ -2.04
VPS13C-210ENST00000561258 INSL3P51460 131 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 EMP1P54849 157 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 DEFA3P59666 94 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 HES1Q14469 280 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 ZNF181Q2M3W8 571 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 Q6Q795 121 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 C2orf50Q96LR7 162 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 CHST6Q9GZX3 395 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 VCX3BQ9H321 246 aa2.33□□□□□ -2.04
VPS13C-210ENST00000561258 DNAH6Q9C0G6 4158 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 RFPL4AA6NLU0 287 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 RFPL4AL1F8VTS6 287 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 H3BSH0 61 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 IFNA1P01562 189 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 PPBPP02775 128 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 KLRD1Q13241 179 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 SPANXN3Q5MJ09 141 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 Q5VSD8 79 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 SLC48A1Q6P1K1 146 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 MMGT1Q8N4V1 131 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 TERB2Q8NHR7 220 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 GPR146Q96CH1 333 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 TVP23BQ9NYZ1 205 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 PYCARDQ9ULZ3 195 aa2.32□□□□□ -2.04
VPS13C-210ENST00000561258 UTP11Q9Y3A2 253 aaKnown RBP2.32□□□□□ -2.04
VPS13C-210ENST00000561258 DNAH17Q9UFH2 4485 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 TMSB15BA0A087X1C1 80 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 TRAV4A0A0B4J268 109 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 A0A0G2JQZ4 141 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 M0R2N4 97 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 SLC22A1O15245 554 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 ATG12O94817 140 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 S1PR2O95136 353 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 FABP1P07148 127 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 OR4E1P0C645 316 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 RPS4Y1P22090 263 aaKnown RBP2.31□□□□□ -2.04
VPS13C-210ENST00000561258 HINT1P49773 126 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-210ENST00000561258 CDC42P60953 191 aa2.31□□□□□ -2.04
VPS13C-210ENST00000561258 BLCAPP62952 87 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms