RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TAL2Q16559 108 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 C15orf32Q32M92 178 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 PRR9Q5T870 116 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 CCDC144NLQ6NUI1 221 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 Q8N9W7 124 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 MSRB2Q9Y3D2 182 aa4.15□□□□□ -1.74
LIMA1-212ENST00000552491 F8W1H4 67 aa4.15□□□□□ -1.75
LIMA1-212ENST00000552491 IGF1P05019 195 aa4.15□□□□□ -1.75
LIMA1-212ENST00000552491 ZFP36P26651 326 aaKnown RBP4.15□□□□□ -1.75
LIMA1-212ENST00000552491 FOXI2Q6ZQN5 318 aa4.15□□□□□ -1.75
LIMA1-212ENST00000552491 MTURNQ8N3F0 131 aa4.15□□□□□ -1.75
LIMA1-212ENST00000552491 ZNF502Q8TBZ5 544 aa4.15□□□□□ -1.75
LIMA1-212ENST00000552491 CCDC140Q96MF4 163 aa4.15□□□□□ -1.75
LIMA1-212ENST00000552491 SLC50A1Q9BRV3 221 aa4.15□□□□□ -1.75
LIMA1-212ENST00000552491 A0A087WX48 190 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 OOSP1A8MZH6 123 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 IGLL5B9A064 214 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 G3V318 75 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 TMEM11P17152 192 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 ECSCRQ19T08 205 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 SHISA2Q6UWI4 295 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 AMTNQ6UX39 209 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 C1orf122Q6ZSJ8 110 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 TIMD4Q96H15 378 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 AJUBAQ96IF1 538 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 MDFIQ99750 246 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 UFC1Q9Y3C8 167 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 COL6A6A6NMZ7 2263 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 IGHV4-4A0A075B6R2 117 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 H3BMG7 143 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 DEFB1P60022 68 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 KLK9Q2XQG4 91 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 CLEC19AQ6UXS0 136 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 SH2D6Q7Z4S9 175 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 VKORC1Q9BQB6 163 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 KLK9Q9UKQ9 250 aa4.14□□□□□ -1.75
LIMA1-212ENST00000552491 COL12A1Q99715 3063 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 TRBV7-3A0A075B6L6 115 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 H3BVH4 76 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 ATP6V0E1O15342 81 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 PLNP26678 52 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 C12orf74Q32Q52 190 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 TMEM78Q5T7P6 136 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 MINOS1Q5TGZ0 78 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 LCNL1Q6ZST4 164 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 FAM110DQ8TAY7 271 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-212ENST00000552491 GTSF1LQ9H1H1 148 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 KLK15Q9H2R5 256 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 SPANXB1Q9NS25 103 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-212ENST00000552491 HIF1ANQ9NWT6 349 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 MINOS1-NBL1R4GNA1 71 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 TRAV12-1A0A0B4J245 112 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-212ENST00000552491 J3KRW8 73 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 SAMD13Q5VXD3 122 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 MRPL53Q96EL3 112 aaKnown RBP4.13□□□□□ -1.75
LIMA1-212ENST00000552491 ZNF479Q96JC4 524 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 C20orf173Q96LM9 149 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 SIGMAR1Q99720 223 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 CHTOPQ9Y3Y2 248 aaKnown RBP4.13□□□□□ -1.75
LIMA1-212ENST00000552491 TSSC4Q9Y5U2 329 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-212ENST00000552491 MUC4Q99102 2169 aa4.13□□□□□ -1.75
LIMA1-212ENST00000552491 SPTAN1Q13813 2472 aaKnown RBP4.13□□□□□ -1.75
LIMA1-212ENST00000552491 F8VRH5 84 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 LINC01619G3V211 115 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 H7C1H1 209 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 J3QR89 54 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 CIDEAO60543 219 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 SCGB1A1P11684 91 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 AZU1P20160 251 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 INSL3P51460 131 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 ETDBQ3ZM63 59 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 CD300EQ496F6 205 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-212ENST00000552491 SPANXN1Q5VSR9 72 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 C11orf71Q6IPW1 123 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 C9orf47Q6ZRZ4 202 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 RPL39LQ96EH5 51 aaKnown RBP4.12□□□□□ -1.75
LIMA1-212ENST00000552491 MRAP2Q96G30 205 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 HIST1H4GQ99525 98 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 PRO0461Q9UI25 63 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 A0A1B0GWB2 263 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 A0A1W2PPR1 153 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 PRSS29PA6NIE9 313 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 FBXL19-AS1Q494R0 122 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 RASL10AQ92737 203 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 SPAG8Q99932 426 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-212ENST00000552491 SMIM2Q9BVW6 85 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 SIRPDQ9H106 197 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 CACNA1AO00555 2505 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 IGF2RP11717 2491 aa4.12□□□□□ -1.75
LIMA1-212ENST00000552491 MYMXA0A1B0GTQ4 84 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 GAGE12HA6NDE8 117 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 SMAGPQ0VAQ4 97 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 RRN3P1Q2M238 152 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 GAGE13Q4V321 117 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 ORMDL2Q53FV1 153 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 MORN3Q6PF18 240 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-212ENST00000552491 GPHB5Q86YW7 130 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 DEFB104AQ8WTQ1 72 aa4.11□□□□□ -1.75
LIMA1-212ENST00000552491 METTL26Q96S19 204 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 275.5 ms