RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 XIRP2A4UGR9 3374 aa12.71□□□□□ -0.37
CUX1-213ENST00000549414 CIRBPQ14011 172 aaKnown RBP12.71□□□□□ -0.37
CUX1-213ENST00000549414 COA6Q5JTJ3 125 aaKnown RBP12.71□□□□□ -0.37
CUX1-213ENST00000549414 TRGV1A0A0A0MS02 117 aa12.71□□□□□ -0.38
CUX1-213ENST00000549414 SPOCK3Q9BQ16 436 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 MSRB1Q9NZV6 116 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 ATG2AQ2TAZ0 1938 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 DEFB1P60022 68 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 TCTEX1D4Q5JR98 221 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 DTX2Q86UW9 622 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 LINC00574Q9H8X3 128 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 XCL2Q9UBD3 114 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 CPAMD8Q8IZJ3 1885 aa12.7□□□□□ -0.38
CUX1-213ENST00000549414 GATA1P15976 413 aaPredicted RBP12.7□□□□□ -0.38
CUX1-213ENST00000549414 PRAC2D3DTV9 90 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 DEFB130BP0DP73 79 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 DEFB130AP0DP74 79 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 RNF114Q9Y508 228 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 C19orf84I3L1E1 186 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 DLEU1O43261 78 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 HSD52Q0P140 79 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 DEFB136Q30KP8 78 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 PHLDA1Q8WV24 401 aaPredicted RBP12.69□□□□□ -0.38
CUX1-213ENST00000549414 RNASE1P07998 156 aaKnown RBP12.69□□□□□ -0.38
CUX1-213ENST00000549414 ZNF415Q09FC8 603 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 COTL1Q14019 142 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 GTSF1Q8WW33 167 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 FANCD2OSQ96PS1 177 aa12.69□□□□□ -0.38
CUX1-213ENST00000549414 TRAV2A0A0B4J234 112 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 DEFB113Q30KQ7 82 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 LINC00173Q6ZV60 143 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 EXPH5Q8NEV8 1989 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 A0A1B0GWB2 263 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 VCYO14598 125 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 CFHR4Q92496 578 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 TMEM101Q96IK0 257 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 HIST2H2BCQ6DN03 193 aa12.68□□□□□ -0.38
CUX1-213ENST00000549414 LINC01548A6NM66 108 aa12.67□□□□□ -0.38
CUX1-213ENST00000549414 IGHV7-4-1A0A0J9YVY3 117 aa12.67□□□□□ -0.38
CUX1-213ENST00000549414 CHCHD5Q9BSY4 110 aa12.67□□□□□ -0.38
CUX1-213ENST00000549414 CRYGCP07315 174 aa12.67□□□□□ -0.38
CUX1-213ENST00000549414 OR9G4Q8NGQ1 327 aa12.67□□□□□ -0.38
CUX1-213ENST00000549414 SMPXQ9UHP9 88 aa12.67□□□□□ -0.38
CUX1-213ENST00000549414 INS-IGF2F8WCM5 200 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 GNRH2O43555 120 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 BUB3O43684 328 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 C10orf105Q8TEF2 133 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 IGHV3-16A0A0C4DH30 117 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 SEC11AP67812 179 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 C2orf66Q6UXQ4 117 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 OR13C6PQ8NH95 151 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 DSCAML1Q8TD84 2053 aa12.66□□□□□ -0.38
CUX1-213ENST00000549414 CDSNQ15517 529 aa12.65□□□□□ -0.38
CUX1-213ENST00000549414 TEX43Q6ZNM6 134 aa12.65□□□□□ -0.38
CUX1-213ENST00000549414 PCP4P48539 62 aa12.65□□□□□ -0.38
CUX1-213ENST00000549414 C5orf56Q8N8D9 126 aa12.65□□□□□ -0.38
CUX1-213ENST00000549414 SIRPDQ9H106 197 aa12.65□□□□□ -0.38
CUX1-213ENST00000549414 NPC2P61916 151 aa12.64□□□□□ -0.39
CUX1-213ENST00000549414 AJUBAQ96IF1 538 aa12.64□□□□□ -0.39
CUX1-213ENST00000549414 LINC00322Q6ZN03 302 aaPredicted RBP12.64□□□□□ -0.39
CUX1-213ENST00000549414 MEGF9Q9H1U4 602 aa12.64□□□□□ -0.39
CUX1-213ENST00000549414 WIPF2Q8TF74 440 aaPredicted RBP12.64□□□□□ -0.39
CUX1-213ENST00000549414 ZNF479Q96JC4 524 aa12.64□□□□□ -0.39
CUX1-213ENST00000549414 TP53TG1Q9Y2A0 90 aa12.64□□□□□ -0.39
CUX1-213ENST00000549414 H3BRM9 83 aa12.63□□□□□ -0.39
CUX1-213ENST00000549414 ZNF124Q15973 351 aa12.63□□□□□ -0.39
CUX1-213ENST00000549414 LMO4P61968 165 aa12.63□□□□□ -0.39
CUX1-213ENST00000549414 Q8N8P6 123 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 PLNP26678 52 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 KIR3DS1Q14943 382 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 SAMD5Q5TGI4 173 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 Q6ZVH6 145 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 DKK2Q9UBU2 259 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 CFAP54Q96N23 3096 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 A0A087WX48 190 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 MRPL35Q9NZE8 188 aaKnown RBP12.62□□□□□ -0.39
CUX1-213ENST00000549414 KLF12Q9Y4X4 402 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 WI2-2373I1.2A0A1W2PRP0 233 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 SDHAF1A6NFY7 115 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 IGLV2-8P01709 118 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 TRBV12-3P01733 135 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 C1orf159Q96HA4 380 aa12.62□□□□□ -0.39
CUX1-213ENST00000549414 MRPS16Q9Y3D3 137 aaKnown RBP12.62□□□□□ -0.39
CUX1-213ENST00000549414 COL5A1P20908 1838 aaPredicted RBP12.62□□□□□ -0.39
CUX1-213ENST00000549414 CDKN1BP46527 198 aa12.61□□□□□ -0.39
CUX1-213ENST00000549414 CFHR3Q02985 330 aa12.61□□□□□ -0.39
CUX1-213ENST00000549414 HECTD1Q9ULT8 2610 aa12.61□□□□□ -0.39
CUX1-213ENST00000549414 LINC01619G3V211 115 aa12.61□□□□□ -0.39
CUX1-213ENST00000549414 INSP01308 110 aa12.61□□□□□ -0.39
CUX1-213ENST00000549414 IGHV1OR15-1A0A075B7D0 117 aa12.61□□□□□ -0.39
CUX1-213ENST00000549414 LY6G5BQ8NDX9 201 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 J3QLI3 93 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 HOXD3P31249 432 aaPredicted RBP12.6□□□□□ -0.39
CUX1-213ENST00000549414 CHAC1Q9BUX1 264 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 ZNF747Q9BV97 191 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 SMIM2Q9BVW6 85 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 UNQ9165/PRO28630Q6UXU0 137 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 SPXQ9BT56 116 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 VPREB3Q9UKI3 123 aa12.6□□□□□ -0.39
CUX1-213ENST00000549414 LINC01559Q495D7 138 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms