RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 GAGE12GP0CL81 117 aa9.78□□□□□ -0.84
COL4A6-209ENST00000545689 GAGE12IP0CL82 117 aa9.78□□□□□ -0.84
COL4A6-209ENST00000545689 TMEM89A2RUT3 159 aa9.77□□□□□ -0.85
COL4A6-209ENST00000545689 TEX22C9J3V5 150 aa9.77□□□□□ -0.85
COL4A6-209ENST00000545689 P0C879 139 aa9.77□□□□□ -0.85
COL4A6-209ENST00000545689 DEFB125Q8N687 156 aa9.77□□□□□ -0.85
COL4A6-209ENST00000545689 ZNF561-AS1K7EIQ3 104 aa9.77□□□□□ -0.85
COL4A6-209ENST00000545689 IGLV1-47P01700 117 aa9.77□□□□□ -0.85
COL4A6-209ENST00000545689 KIAA1549LQ6ZVL6 1849 aa9.77□□□□□ -0.85
COL4A6-209ENST00000545689 YLPM1P49750 1951 aaKnown RBP9.76□□□□□ -0.85
COL4A6-209ENST00000545689 HOXD3P31249 432 aaPredicted RBP9.76□□□□□ -0.85
COL4A6-209ENST00000545689 DEFB112Q30KQ8 113 aa9.76□□□□□ -0.85
COL4A6-209ENST00000545689 TSSC4Q9Y5U2 329 aaPredicted RBP9.76□□□□□ -0.85
COL4A6-209ENST00000545689 HERV-K104P63124 156 aa9.76□□□□□ -0.85
COL4A6-209ENST00000545689 BUB3O43684 328 aa9.76□□□□□ -0.85
COL4A6-209ENST00000545689 LINC00574Q9H8X3 128 aa9.76□□□□□ -0.85
COL4A6-209ENST00000545689 C9orf47Q6ZRZ4 202 aa9.76□□□□□ -0.85
COL4A6-209ENST00000545689 F5H768 121 aa9.76□□□□□ -0.85
COL4A6-209ENST00000545689 GNRH2O43555 120 aa9.76□□□□□ -0.85
COL4A6-209ENST00000545689 ZNF625Q96I27 306 aaPredicted RBP9.76□□□□□ -0.85
COL4A6-209ENST00000545689 APC2O95996 2303 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 TRAV12-1A0A0B4J245 112 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 K7EMT4 169 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 DAZAP2Q15038 168 aaPredicted RBP9.75□□□□□ -0.85
COL4A6-209ENST00000545689 RITA1Q96K30 269 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 MORN5Q5VZ52 161 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 Q8N9W7 124 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 SPAG8Q99932 426 aaPredicted RBP9.75□□□□□ -0.85
COL4A6-209ENST00000545689 SCRT2Q9NQ03 307 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 GAGE6Q13070 117 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 FBXL19-AS1Q494R0 122 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 ASPHD1Q5U4P2 390 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 SEM1Q6ZVN7 128 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 MAJINQ3KP22 176 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 C5orf56Q8N8D9 126 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 KMT2EQ8IZD2 1858 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 IGHV3-38A0A0C4DH36 116 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 CTRLP40313 264 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 CFHR3Q02985 330 aa9.75□□□□□ -0.85
COL4A6-209ENST00000545689 PSCAO43653 123 aa9.74□□□□□ -0.85
COL4A6-209ENST00000545689 GRNP28799 593 aaKnown RBP9.74□□□□□ -0.85
COL4A6-209ENST00000545689 RMI2Q96E14 147 aa9.74□□□□□ -0.85
COL4A6-209ENST00000545689 IFITM1P13164 125 aa9.74□□□□□ -0.85
COL4A6-209ENST00000545689 DENND4AQ7Z401 1863 aa9.74□□□□□ -0.85
COL4A6-209ENST00000545689 IGHV4-59P01825 116 aa9.74□□□□□ -0.85
COL4A6-209ENST00000545689 ETDBQ3ZM63 59 aa9.74□□□□□ -0.85
COL4A6-209ENST00000545689 HIGD1BQ9P298 99 aa9.74□□□□□ -0.85
COL4A6-209ENST00000545689 TMEM131Q92545 1883 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 MAPK1IP1LQ8NDC0 245 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 RPL32P62910 135 aaKnown RBP9.73□□□□□ -0.85
COL4A6-209ENST00000545689 Q6ZVH6 145 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 SUMO4Q6EEV6 95 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 CDK2AP2O75956 126 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 IGHG4P01861 327 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 CFC1BP0CG36 223 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 CFC1P0CG37 223 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 PFN2P35080 140 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 C10orf105Q8TEF2 133 aa9.73□□□□□ -0.85
COL4A6-209ENST00000545689 F6UB75 175 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 C3orf56Q8N813 242 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 GTSF1Q8WW33 167 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 CARD19Q96LW7 228 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 EDA2RQ9HAV5 297 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 U3KQE9 123 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 C2orf16Q68DN1 1984 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 K7ERJ3 54 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 UBL5Q9BZL1 73 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 IGHV4-61A0A0C4DH41 118 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 A0A1W2PNU3 283 aaPredicted RBP9.72□□□□□ -0.85
COL4A6-209ENST00000545689 CDPF1Q6NVV7 123 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 SLC25A29Q8N8R3 303 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 AJUBAQ96IF1 538 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 ICE1Q9Y2F5 2266 aa9.72□□□□□ -0.85
COL4A6-209ENST00000545689 NUPR1O60356 82 aa9.71□□□□□ -0.85
COL4A6-209ENST00000545689 C16orf74Q96GX8 76 aa9.71□□□□□ -0.85
COL4A6-209ENST00000545689 ADORA2A-AS1P86434 159 aa9.71□□□□□ -0.85
COL4A6-209ENST00000545689 GAGE12HA6NDE8 117 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 J3QKU1 62 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 NKAPP1Q8N9T2 125 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 FSTL3O95633 263 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 MYO7BQ6PIF6 2116 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 ZFP2Q6ZN57 461 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 ZNF407Q9C0G0 2248 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 IGKV1OR2-108A0A075B7D4 117 aa9.71□□□□□ -0.86
COL4A6-209ENST00000545689 C19orf71A6NCJ1 209 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 PCP2Q8IVA1 136 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 Q8N7P7 452 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 TEX48A0A1B0GUV7 120 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 H3BMG7 143 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 SPANXCQ9NY87 97 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 CCL24O00175 119 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 DEFB113Q30KQ7 82 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 DOCK9Q9BZ29 2069 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 TOMM6Q96B49 74 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 DAZ2Q13117 558 aaKnown RBP9.7□□□□□ -0.86
COL4A6-209ENST00000545689 DEFB121Q5J5C9 76 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 DAZ4Q86SG3 579 aaKnown RBP9.7□□□□□ -0.86
COL4A6-209ENST00000545689 GPHB5Q86YW7 130 aa9.7□□□□□ -0.86
COL4A6-209ENST00000545689 DAZ3Q9NR90 486 aaKnown RBP9.7□□□□□ -0.86
COL4A6-209ENST00000545689 SIRPDQ9H106 197 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms