RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 SHANK2-AS3Q9BTD1 123 aa4.42□□□□□ -1.7
CSDE1-213ENST00000530784 SLC25A39Q9BZJ4 359 aaPredicted RBP4.42□□□□□ -1.7
CSDE1-213ENST00000530784 LINC00588Q9Y4M8 146 aa4.42□□□□□ -1.7
CSDE1-213ENST00000530784 PKD1P98161 4303 aa4.42□□□□□ -1.7
CSDE1-213ENST00000530784 DYNC1H1Q14204 4646 aaKnown RBP4.42□□□□□ -1.7
CSDE1-213ENST00000530784 DNAH11Q96DT5 4516 aa4.42□□□□□ -1.7
CSDE1-213ENST00000530784 FABP12A6NFH5 140 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 H3BP45 60 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 H3BRN7 92 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 IL5P05113 134 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 OR5G3P0C626 314 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 LINC00869P0C866 280 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 CXCL3P19876 107 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 TAS2R60P59551 318 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 AP3S2P59780 193 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 TTC32Q5I0X7 151 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 LINC00299Q6ZSB3 139 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 CYP2G1PQ6ZSU1 146 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 SSX7Q7RTT5 188 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 TMEM144Q7Z5S9 345 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 S100A7AQ86SG5 101 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 OR8A1Q8NGG7 326 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 LRRC20Q8TCA0 184 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 DYNC2LI1Q8TCX1 351 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 LINC01587Q99440 93 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 HIGD1AQ9Y241 93 aa4.41□□□□□ -1.7
CSDE1-213ENST00000530784 TIMM8BQ9Y5J9 83 aaPredicted RBP4.41□□□□□ -1.7
CSDE1-213ENST00000530784 H7BYZ3 331 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 NOL3O60936 208 aaKnown RBP4.4□□□□□ -1.71
CSDE1-213ENST00000530784 HYPMO75409 117 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 SFT2D2O95562 160 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 CDKN1BP46527 198 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 PPP1R1AQ13522 171 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 PSG3Q16557 428 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 ZNF493Q6ZR52 646 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 SPATA12Q7Z6I5 190 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 TOMM5Q8N4H5 51 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 OR10J6PQ8NGY7 276 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 MCFD2Q8NI22 146 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 TMEM263Q8WUH6 116 aaKnown RBP4.4□□□□□ -1.71
CSDE1-213ENST00000530784 RPUSD4Q96CM3 377 aaKnown RBP4.4□□□□□ -1.71
CSDE1-213ENST00000530784 GNPNAT1Q96EK6 184 aaPredicted RBP4.4□□□□□ -1.71
CSDE1-213ENST00000530784 SLC25A21Q9BQT8 299 aaPredicted RBP4.4□□□□□ -1.71
CSDE1-213ENST00000530784 SLIRPQ9GZT3 109 aaKnown RBP4.4□□□□□ -1.71
CSDE1-213ENST00000530784 NOP10Q9NPE3 64 aaKnown RBP4.4□□□□□ -1.71
CSDE1-213ENST00000530784 DNAH17Q9UFH2 4485 aa4.4□□□□□ -1.71
CSDE1-213ENST00000530784 TRAV26-1A0A087WT03 109 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 CCDC160A6NGH7 325 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 SSSCA1O60232 199 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 ADAP1O75689 374 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 CXCL2P19875 107 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 M6PRP20645 277 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 PLP1P60201 277 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 SELENOTP62341 195 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 POLR2GP62487 172 aaKnown RBP eCLIP4.39□□□□□ -1.71
CSDE1-213ENST00000530784 OR5I1Q13606 314 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 PYDC2Q56P42 97 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 ARL6Q9H0F7 186 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 PSENENQ9NZ42 101 aa4.39□□□□□ -1.71
CSDE1-213ENST00000530784 A0A0J9YY99 117 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 K7EPK0 472 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 RLN2P04090 185 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 PRB4P10163 310 aaPredicted RBP4.38□□□□□ -1.71
CSDE1-213ENST00000530784 RPL29P47914 159 aaKnown RBP4.38□□□□□ -1.71
CSDE1-213ENST00000530784 RRAS2P62070 204 aaPredicted RBP4.38□□□□□ -1.71
CSDE1-213ENST00000530784 SLC38A11Q08AI6 406 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 LCN15Q6UWW0 184 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 ZNF546Q86UE3 836 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 RXFP4Q8TDU9 374 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 DEDD2Q8WXF8 326 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 C20orf144Q9BQM9 153 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 SLC50A1Q9BRV3 221 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 UPK3BQ9BT76 320 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 ARV1Q9H2C2 271 aa4.38□□□□□ -1.71
CSDE1-213ENST00000530784 ZNF331Q9NQX6 463 aaPredicted RBP4.38□□□□□ -1.71
CSDE1-213ENST00000530784 NACAE9PAV3 2078 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 FNDC10F2Z333 226 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 H3BNG1 76 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 MRPS12O15235 138 aaKnown RBP4.37□□□□□ -1.71
CSDE1-213ENST00000530784 ZNF861PO60384 105 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 COX7A2P2O60397 106 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 CCNKO75909 580 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 METTL15P1P0C7V9 234 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 UBE2MP61081 183 aaKnown RBP4.37□□□□□ -1.71
CSDE1-213ENST00000530784 TMEM14EPQ6UXP3 125 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 PATE2Q6UY27 113 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 LINC00305Q7Z4B0 112 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 BPIFA4PQ86YQ2 179 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 OR10P1Q8NGE3 313 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 SMIM8Q96KF7 97 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 PARD6GQ9BYG4 376 aaPredicted RBP4.37□□□□□ -1.71
CSDE1-213ENST00000530784 PPDPFQ9H3Y8 114 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 NPVFQ9HCQ7 196 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 MRPS16Q9Y3D3 137 aaKnown RBP4.37□□□□□ -1.71
CSDE1-213ENST00000530784 V9GYH0 126 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 HSPG2P98160 4391 aa4.37□□□□□ -1.71
CSDE1-213ENST00000530784 C9orf170A2RU37 121 aa4.36□□□□□ -1.71
CSDE1-213ENST00000530784 SLC17A3O00476 420 aa4.36□□□□□ -1.71
CSDE1-213ENST00000530784 GOSR2O14653 212 aa4.36□□□□□ -1.71
CSDE1-213ENST00000530784 S100A5P33763 92 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms