RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 RTBDNQ9BSG5 229 aaPredicted RBP2.33□□□□□ -2.04
CD44-219ENST00000525685 SNHG12Q9BXW3 62 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 NAA60Q9H7X0 242 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 C14orf166Q9Y224 244 aaKnown RBP2.33□□□□□ -2.04
CD44-219ENST00000525685 MXRA5Q9NR99 2828 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 C3orf85A0A1B0GTC6 90 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TEX50A0A1B0GTY4 177 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 IGLC7A0M8Q6 106 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 NAP1L6A6NFF2 107 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 CCL25O15444 150 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 PLA2G10O15496 165 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 ATG12O94817 140 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 KRASP01116 189 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 IGHV3-11P01762 117 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 PRH1P02810 166 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TRGV3P03979 118 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TYMSP04818 313 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 REG1AP05451 166 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 LGALS1P09382 135 aaKnown RBP2.32□□□□□ -2.04
CD44-219ENST00000525685 S100A2P29034 98 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 MYCNOSP40205 109 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 INPP1P49441 399 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 AKR1C2P52895 323 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TCTAP57738 103 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TPPP2P59282 170 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 SUPT4H1P63272 117 aaKnown RBP2.32□□□□□ -2.04
CD44-219ENST00000525685 WT1-ASQ06250 92 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 BAXQ07812 192 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 FABP9Q0Z7S8 132 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 PPP1R1AQ13522 171 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 SP6Q3SY56 376 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TOMM20LQ6UXN7 152 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TTC9CQ8N5M4 171 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 ZNF502Q8TBZ5 544 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 C4orf3Q8WVX3 66 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 GALNT14Q96FL9 552 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 UBE2E2Q96LR5 201 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 SCGB3A2Q96PL1 93 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 SPIN2AQ99865 258 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 SPIN2BQ9BPZ2 258 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 C20orf144Q9BQM9 153 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 NKX6-2Q9C056 277 aaPredicted RBP2.32□□□□□ -2.04
CD44-219ENST00000525685 COMMD5Q9GZQ3 224 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 ARL6Q9H0F7 186 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 TMEM222Q9H0R3 208 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 CST9LQ9H4G1 147 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 SPANXB1Q9NS25 103 aaPredicted RBP2.32□□□□□ -2.04
CD44-219ENST00000525685 ZNF355PQ9NSJ1 428 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 SS18L2Q9UHA2 77 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 ZNF257Q9Y2Q1 563 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 OR51B2Q9Y5P1 312 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 U3KQ87 197 aa2.32□□□□□ -2.04
CD44-219ENST00000525685 JMJD1CQ15652 2540 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 TRAV30A0A087WSZ9 112 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 TRBV9A0A0B4J1U6 114 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 FAM223BA6NKX1 122 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 LINC01619G3V211 115 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 CORTO00230 105 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 LYRM1O43325 122 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 NDUFB6O95139 128 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 SFT2D2O95562 160 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 CDS2O95674 445 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 TRBV12-3P01733 135 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 FGF7P21781 194 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 DEFA1P59665 94 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 DEFA3P59666 94 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 HSPE1P61604 102 aaKnown RBP2.31□□□□□ -2.04
CD44-219ENST00000525685 RHOGP84095 191 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 PRCDQ00LT1 54 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 RUNX1Q01196 453 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 IFITM3Q01628 133 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 OR2F1Q13607 317 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 TMEM241Q24JQ0 296 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 KLK9Q2XQG4 91 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 SPINK9Q5DT21 86 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 COL5A1-AS1Q5SY13 56 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 TMEM78Q5T7P6 136 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 TEX43Q6ZNM6 134 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 LINC00336Q6ZUF6 198 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 FAM223AQ8IWN6 122 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 SGPP2Q8IWX5 399 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 SLC35G3Q8N808 338 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 WFDC9Q8NEX5 89 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 OR1L8Q8NGR8 309 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 OR5B3Q8NH48 314 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 LYPD6BQ8NI32 183 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 Q8WTZ3 238 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 FRZBQ92765 325 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 LSM10Q969L4 123 aaKnown RBP2.31□□□□□ -2.04
CD44-219ENST00000525685 GPR146Q96CH1 333 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 USMG5Q96IX5 58 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 HYLS1Q96M11 299 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 ATP5SQ99766 215 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 SLC25A21Q9BQT8 299 aaPredicted RBP2.31□□□□□ -2.04
CD44-219ENST00000525685 NDUFA4L2Q9NRX3 87 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 TMEM14BQ9NUH8 114 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 KLK9Q9UKQ9 250 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 PRNDQ9UKY0 176 aa2.31□□□□□ -2.04
CD44-219ENST00000525685 YTHDF2Q9Y5A9 579 aaKnown RBP2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms