RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 A0A0D9SG52 128 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 MAP1LC3B2A6NCE7 125 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 GCGP01275 180 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 TYMSP04818 313 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 FHL2Q14192 279 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 SMUG1Q53HV7 270 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 SOHLH1Q5JUK2 328 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 C1orf134Q5TEV5 83 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 RASL10AQ92737 203 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 LINC00479Q96M42 142 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 MAP1LC3BQ9GZQ8 125 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 PRO0255Q9UI72 69 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 HHLA3Q9XRX5 114 aa14.49□□□□□ -0.09
VPS28-203ENST00000524521 TRAV34A0A0B4J273 112 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 TRGV4A0A0C4DH28 118 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 NBDYA0A0U1RRE5 68 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 FBLL1A6NHQ2 334 aaKnown RBP14.48□□□□□ -0.09
VPS28-203ENST00000524521 FAM74A7A6NL05 159 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 SFTA3P0C7M3 94 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 SLAQ13239 276 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 ZFP69Q49AA0 526 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 SAPCD1Q5SSQ6 148 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 ZNF471Q9BX82 626 aaPredicted RBP14.48□□□□□ -0.09
VPS28-203ENST00000524521 NKX6-2Q9C056 277 aaPredicted RBP14.48□□□□□ -0.09
VPS28-203ENST00000524521 Q9H8V8 135 aa14.48□□□□□ -0.09
VPS28-203ENST00000524521 KANTRA0A1W2PQU2 76 aa14.47□□□□□ -0.09
VPS28-203ENST00000524521 M0R2P5 195 aa14.47□□□□□ -0.09
VPS28-203ENST00000524521 FHITP49789 147 aa14.47□□□□□ -0.09
VPS28-203ENST00000524521 STOML3Q8TAV4 291 aa14.47□□□□□ -0.09
VPS28-203ENST00000524521 ZNF479Q96JC4 524 aa14.47□□□□□ -0.09
VPS28-203ENST00000524521 C11orf21Q9P2W6 132 aa14.47□□□□□ -0.09
VPS28-203ENST00000524521 ICOSQ9Y6W8 199 aa14.47□□□□□ -0.09
VPS28-203ENST00000524521 PEX7O00628 323 aa14.46□□□□□ -0.09
VPS28-203ENST00000524521 PFN1P07737 140 aaKnown RBP14.46□□□□□ -0.09
VPS28-203ENST00000524521 SEC11BP0C7V7 166 aa14.46□□□□□ -0.09
VPS28-203ENST00000524521 PPT1P50897 306 aa14.46□□□□□ -0.09
VPS28-203ENST00000524521 CRYBA4P53673 196 aa14.46□□□□□ -0.09
VPS28-203ENST00000524521 BCL2L11O43521 198 aa14.45□□□□□ -0.1
VPS28-203ENST00000524521 MRPS16Q9Y3D3 137 aaKnown RBP14.45□□□□□ -0.1
VPS28-203ENST00000524521 OR4C5Q8NGB2 326 aa14.44□□□□□ -0.1
VPS28-203ENST00000524521 HIST1H2BAQ96A08 127 aa14.44□□□□□ -0.1
VPS28-203ENST00000524521 ARL2-SNX15V9GYD0 113 aa14.44□□□□□ -0.1
VPS28-203ENST00000524521 TRAV4A0A0B4J268 109 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 A0A1B0GVY2 172 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 PFDN1O60925 122 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 CST9LP1Q5W188 147 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 TMUB2Q71RG4 321 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 FAM213BQ8TBF2 198 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 SFT2D1Q8WV19 159 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 UPK3BQ9BT76 320 aa14.43□□□□□ -0.1
VPS28-203ENST00000524521 UMAD1C9J7I0 102 aa14.42□□□□□ -0.1
VPS28-203ENST00000524521 C9JCJ5 164 aa14.42□□□□□ -0.1
VPS28-203ENST00000524521 EIF5AP63241 154 aaKnown RBP14.42□□□□□ -0.1
VPS28-203ENST00000524521 MRPL23Q16540 153 aaKnown RBP14.42□□□□□ -0.1
VPS28-203ENST00000524521 A0A1B0GV50 99 aa14.41□□□□□ -0.1
VPS28-203ENST00000524521 C6orf223Q8N319 242 aa14.41□□□□□ -0.1
VPS28-203ENST00000524521 MBD3L1Q8WWY6 194 aa14.41□□□□□ -0.1
VPS28-203ENST00000524521 FABP5P3A8MUU1 101 aa14.4□□□□□ -0.1
VPS28-203ENST00000524521 ZNF876PQ49A33 203 aa14.4□□□□□ -0.1
VPS28-203ENST00000524521 Q86TA4 180 aa14.4□□□□□ -0.1
VPS28-203ENST00000524521 PAGE4O60829 102 aa14.39□□□□□ -0.11
VPS28-203ENST00000524521 GYPEP15421 78 aa14.39□□□□□ -0.11
VPS28-203ENST00000524521 UBE2G1P62253 170 aa14.39□□□□□ -0.11
VPS28-203ENST00000524521 Q6ZNX1 250 aa14.39□□□□□ -0.11
VPS28-203ENST00000524521 NEGR1Q7Z3B1 354 aa14.39□□□□□ -0.11
VPS28-203ENST00000524521 TPT1P13693 172 aaKnown RBP14.38□□□□□ -0.11
VPS28-203ENST00000524521 TTC32Q5I0X7 151 aa14.38□□□□□ -0.11
VPS28-203ENST00000524521 LYPD5Q6UWN5 251 aa14.38□□□□□ -0.11
VPS28-203ENST00000524521 DPPA3Q6W0C5 159 aa14.38□□□□□ -0.11
VPS28-203ENST00000524521 PCNPQ8WW12 178 aaKnown RBP14.38□□□□□ -0.11
VPS28-203ENST00000524521 FMC1Q96HJ9 113 aa14.38□□□□□ -0.11
VPS28-203ENST00000524521 C9orf85Q96MD7 179 aa14.38□□□□□ -0.11
VPS28-203ENST00000524521 ZFP30Q9Y2G7 519 aa14.38□□□□□ -0.11
VPS28-203ENST00000524521 IGKV3D-20A0A0C4DH25 116 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 K7EQD1 137 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 ORM1P02763 201 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 H2AFB1P0C5Y9 115 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 SRIP30626 198 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 TCEAL7Q9BRU2 100 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 KRTAP1-5Q9BYS1 174 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 DNAH2Q9P225 4427 aa14.37□□□□□ -0.11
VPS28-203ENST00000524521 PGPEP1LA6NFU8 196 aa14.36□□□□□ -0.11
VPS28-203ENST00000524521 RNASE3P12724 160 aaKnown RBP14.36□□□□□ -0.11
VPS28-203ENST00000524521 S100A4P26447 101 aaKnown RBP14.36□□□□□ -0.11
VPS28-203ENST00000524521 ZC2HC1AQ96GY0 325 aa14.36□□□□□ -0.11
VPS28-203ENST00000524521 SIVA1O15304 175 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 RS1O15537 224 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 NXPH4O95158 308 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 AKR1C3P42330 323 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 CRIP1P50238 77 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 LGALSLQ3ZCW2 172 aaPredicted RBP14.35□□□□□ -0.11
VPS28-203ENST00000524521 ZNF506Q5JVG8 444 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 CFAP126Q5VTH2 177 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 DNAH17Q9UFH2 4485 aa14.35□□□□□ -0.11
VPS28-203ENST00000524521 A0A1W2PPQ1 181 aa14.34□□□□□ -0.11
VPS28-203ENST00000524521 B4DEV8 164 aa14.34□□□□□ -0.11
VPS28-203ENST00000524521 GATA1P15976 413 aaPredicted RBP14.34□□□□□ -0.11
VPS28-203ENST00000524521 ASIPP42127 132 aa14.34□□□□□ -0.11
VPS28-203ENST00000524521 TNP2Q05952 138 aa14.34□□□□□ -0.11
VPS28-203ENST00000524521 TCTE3Q8IZS6 198 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms