RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RNASE4P34096 147 aaKnown RBP11.21□□□□□ -0.61
NUP54-217ENST00000514987 SRSF1Q07955 248 aaKnown RBP eCLIP11.21□□□□□ -0.617e-7■□□□□ 8.2
NUP54-217ENST00000514987 ANXA2RQ3ZCQ2 193 aa11.21□□□□□ -0.61
NUP54-217ENST00000514987 MPV17L2Q567V2 206 aa11.21□□□□□ -0.61
NUP54-217ENST00000514987 LCNL1Q6ZST4 164 aa11.21□□□□□ -0.61
NUP54-217ENST00000514987 C20orf78Q9BR46 151 aa11.21□□□□□ -0.61
NUP54-217ENST00000514987 COX11Q9Y6N1 276 aa11.21□□□□□ -0.61
NUP54-217ENST00000514987 M0R381 172 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 SIVA1O15304 175 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 GAS8-AS1O95177 125 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 GATA1P15976 413 aaPredicted RBP11.2□□□□□ -0.62
NUP54-217ENST00000514987 BVES-AS1Q5T3Y7 98 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 LRRC75A-AS1Q8N1F1 130 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 OR9G4Q8NGQ1 327 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 TMEM158Q8WZ71 300 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.2□□□□□ -0.622e-7■■■■■ 42.4
NUP54-217ENST00000514987 KLLNB2CW77 178 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 LGALS9O00182 355 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 FXYD7P58549 80 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 Q6YL49 198 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 MYOZ3Q8TDC0 251 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 DCANP1Q8TF63 244 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 ZMAT4Q9H898 229 aa11.2□□□□□ -0.62
NUP54-217ENST00000514987 J3KRW8 73 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 PRSS1P07477 247 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 LGALS1P09382 135 aaKnown RBP11.19□□□□□ -0.62
NUP54-217ENST00000514987 SNRPD3P62318 126 aaKnown RBP11.19□□□□□ -0.62
NUP54-217ENST00000514987 KIR3DS1Q14943 382 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 TMEM95Q3KNT9 176 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 ORMDL2Q53FV1 153 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 Q6ZQT7 251 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 BOD1L2Q8IYS8 172 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 AP1S3Q96PC3 154 aa11.19□□□□□ -0.62
NUP54-217ENST00000514987 IGKV3-7A0A075B6H7 116 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 F6UB75 175 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 NXPH4O95158 308 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 SMIM17P0DL12 118 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 IGHV4-31P0DP07 118 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 ZNF124Q15973 351 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 ANKRD39Q53RE8 183 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 FAM159AQ6UWV7 190 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 C18orf15Q96N68 181 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 SMIM2Q9BVW6 85 aa11.18□□□□□ -0.62
NUP54-217ENST00000514987 CD5LO43866 347 aa11.17□□□□□ -0.62
NUP54-217ENST00000514987 FGF6P10767 208 aa11.17□□□□□ -0.62
NUP54-217ENST00000514987 SEC11AP67812 179 aa11.17□□□□□ -0.62
NUP54-217ENST00000514987 ODF1Q14990 250 aa11.17□□□□□ -0.62
NUP54-217ENST00000514987 UBE2E2Q96LR5 201 aa11.17□□□□□ -0.62
NUP54-217ENST00000514987 TRAV26-2A0A0B4J265 109 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 RNF223E7ERA6 249 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 C2orf91Q6ZV80 131 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 ZNF843Q8N446 348 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 POM121L12Q8N7R1 296 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 RNF152Q8N8N0 203 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 SPTAN1Q13813 2472 aaKnown RBP11.16□□□□□ -0.62
NUP54-217ENST00000514987 DPM2O94777 84 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 IGKCP01834 107 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 PRB1P04280 392 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 NPSP0C0P6 89 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 RNASE3P12724 160 aaKnown RBP11.16□□□□□ -0.62
NUP54-217ENST00000514987 SUMO2P61956 95 aaKnown RBP11.16□□□□□ -0.62
NUP54-217ENST00000514987 DEFB113Q30KQ7 82 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 DKK2Q9UBU2 259 aa11.16□□□□□ -0.62
NUP54-217ENST00000514987 A1L4Q6 167 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 C7orf71A4D174 169 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 LINC01549A6NIU2 74 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 K7EQG2 157 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 DUSP14O95147 198 aaKnown RBP11.15□□□□□ -0.62
NUP54-217ENST00000514987 SRD5A1P18405 259 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 DEFB1P60022 68 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 TMEM97Q5BJF2 176 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 IGSF10Q6WRI0 2623 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 WFDC3Q8IUB2 231 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 FOXC2Q99958 501 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 ZNF702PQ9H963 129 aa11.15□□□□□ -0.62
NUP54-217ENST00000514987 CFAP46Q8IYW2 2715 aa11.14□□□□□ -0.63
NUP54-217ENST00000514987 GNRH2O43555 120 aa11.14□□□□□ -0.63
NUP54-217ENST00000514987 HLA-DRB4P13762 266 aa11.14□□□□□ -0.63
NUP54-217ENST00000514987 RPL32P62910 135 aaKnown RBP11.14□□□□□ -0.63
NUP54-217ENST00000514987 HSD52Q0P140 79 aa11.14□□□□□ -0.63
NUP54-217ENST00000514987 TP73-AS1Q9UF72 201 aa11.14□□□□□ -0.63
NUP54-217ENST00000514987 HLA-DRB4X5D2U9 266 aa11.14□□□□□ -0.63
NUP54-217ENST00000514987 TRAV12-1A0A0B4J245 112 aa11.13□□□□□ -0.63
NUP54-217ENST00000514987 A0A0J9YX75 114 aa11.13□□□□□ -0.63
NUP54-217ENST00000514987 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.13□□□□□ -0.63
NUP54-217ENST00000514987 UBE2V1Q13404 147 aa11.13□□□□□ -0.63
NUP54-217ENST00000514987 TEX29Q8N6K0 151 aa11.13□□□□□ -0.63
NUP54-217ENST00000514987 C14orf178Q8N769 122 aaPredicted RBP11.13□□□□□ -0.63
NUP54-217ENST00000514987 RASL10AQ92737 203 aa11.13□□□□□ -0.63
NUP54-217ENST00000514987 BBC3Q96PG8 261 aaPredicted RBP11.13□□□□□ -0.63
NUP54-217ENST00000514987 ASH1LQ9NR48 2969 aaKnown RBP11.13□□□□□ -0.63
NUP54-217ENST00000514987 A0A087WX48 190 aa11.12□□□□□ -0.63
NUP54-217ENST00000514987 TAX1BP3O14907 124 aa11.12□□□□□ -0.63
NUP54-217ENST00000514987 MGPP08493 103 aa11.12□□□□□ -0.63
NUP54-217ENST00000514987 PLNP26678 52 aa11.12□□□□□ -0.63
NUP54-217ENST00000514987 PTTG1IPP53801 180 aa11.12□□□□□ -0.63
NUP54-217ENST00000514987 Q8N2B8 174 aa11.12□□□□□ -0.63
NUP54-217ENST00000514987 HHLA3Q9XRX5 114 aa11.12□□□□□ -0.63
NUP54-217ENST00000514987 IGHV4OR15-8A0A075B7B6 117 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 A0A087WW49 117 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms