RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 CUBNO60494 3623 aa12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 LOC389332A0A1B0GUA5 103 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 H0Y8G0 127 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 ORM1P02763 201 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 MPV17L2Q567V2 206 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 IGFL4Q6B9Z1 124 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 U3KQE9 123 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 NSD1Q96L73 2696 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 NCR2O95944 276 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 NPYP01303 97 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 UBE2V1Q13404 147 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 TMEM95Q3KNT9 176 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 FAM106AQ4KMX7 169 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 CLEC19AQ6UXS0 136 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 RNF185Q96GF1 192 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 JMJD8Q96S16 334 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 MAP1LC3AQ9H492 121 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 ZNF702PQ9H963 129 aa12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 TIMM8BQ9Y5J9 83 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 FN1P02751 2386 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-213ENST00000510187 IGHV3-35A0A0C4DH35 117 aa12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 FAM223BA6NKX1 122 aa12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 PRAC2D3DTV9 90 aa12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 TCF21O43680 179 aa12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 NUDT3O95989 172 aa12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 RNASE1P07998 156 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 FAM223AQ8IWN6 122 aa12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 OR8A1Q8NGG7 326 aa12.24□□□□□ -0.45
SQSTM1-213ENST00000510187 PTTG1IPP53801 180 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 ATP5G2Q06055 141 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 ERCC8Q13216 396 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 C19orf54Q5BKX5 351 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 PSMG4Q5JS54 123 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 DEFB125Q8N687 156 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 MCRIP2Q9BUT9 160 aaKnown RBP12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 IGHV3OR16-8A0A075B7F1 116 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 IFI27L1Q96BM0 104 aa12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 NXT2Q9NPJ8 142 aaKnown RBP12.23□□□□□ -0.45
SQSTM1-213ENST00000510187 TRAV8-2A0A0B4J237 113 aa12.22□□□□□ -0.45
SQSTM1-213ENST00000510187 TMEM78Q5T7P6 136 aa12.22□□□□□ -0.45
SQSTM1-213ENST00000510187 C9orf47Q6ZRZ4 202 aa12.22□□□□□ -0.45
SQSTM1-213ENST00000510187 Q8N2B8 174 aa12.22□□□□□ -0.45
SQSTM1-213ENST00000510187 ZNF580Q9UK33 172 aa12.22□□□□□ -0.45
SQSTM1-213ENST00000510187 MUC21A0A0G2JKD1 596 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 MUC21A0A140T8X8 626 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 CCL25O15444 150 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 MUC21Q5SSG8 566 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 C8orf86Q6ZUL3 223 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 RNF182Q8N6D2 247 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 AGPAT4-IT1Q9H0P7 198 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 TP73-AS1Q9UF72 201 aa12.21□□□□□ -0.45
SQSTM1-213ENST00000510187 SMKR1H3BMG3 65 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 TAX1BP3O14907 124 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 PPIFP30405 207 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 Q6ZSV7 163 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 C2orf91Q6ZV80 131 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 LENEPQ9Y5L5 61 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 BRI3O95415 125 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 FGF6P10767 208 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 CACNG7P62955 275 aa12.2□□□□□ -0.46
SQSTM1-213ENST00000510187 IGKV3D-20A0A0C4DH25 116 aa12.19□□□□□ -0.46
SQSTM1-213ENST00000510187 FCER1GP30273 86 aa12.19□□□□□ -0.46
SQSTM1-213ENST00000510187 SEC11AP67812 179 aa12.19□□□□□ -0.46
SQSTM1-213ENST00000510187 CFHR3Q02985 330 aa12.19□□□□□ -0.46
SQSTM1-213ENST00000510187 MSRB1Q9NZV6 116 aa12.19□□□□□ -0.46
SQSTM1-213ENST00000510187 MAST4O15021 2626 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 IGHV4-4A0A075B6R2 117 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 IGHV3-66A0A0C4DH42 116 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 SIVA1O15304 175 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 TNFRSF6BO95407 300 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 ANKRD39Q53RE8 183 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 SMIM15Q7Z3B0 74 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 OR9G4Q8NGQ1 327 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 GLMPQ8WWB7 406 aa12.18□□□□□ -0.46
SQSTM1-213ENST00000510187 PRSS47A8MTI9 375 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 H3BUA1 57 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 PF4V1P10720 104 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 Q6ZVH6 145 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 BOD1L2Q8IYS8 172 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 SNAI2O43623 268 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 IGLV1-40P01703 118 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 TRGV3P03979 118 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 Q8N8P6 123 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 C11orf21Q9P2W6 132 aa12.17□□□□□ -0.46
SQSTM1-213ENST00000510187 IGHV7-4-1A0A0J9YVY3 117 aa12.16□□□□□ -0.46
SQSTM1-213ENST00000510187 TMEM97Q5BJF2 176 aa12.16□□□□□ -0.46
SQSTM1-213ENST00000510187 C10orf99Q6UWK7 81 aa12.16□□□□□ -0.46
SQSTM1-213ENST00000510187 K7EP13 123 aa12.15□□□□□ -0.46
SQSTM1-213ENST00000510187 NDUFA4O00483 81 aa12.15□□□□□ -0.46
SQSTM1-213ENST00000510187 VAMP3Q15836 100 aa12.15□□□□□ -0.46
SQSTM1-213ENST00000510187 C16orf92Q96LL3 132 aa12.15□□□□□ -0.46
SQSTM1-213ENST00000510187 KLK15Q9H2R5 256 aa12.15□□□□□ -0.46
SQSTM1-213ENST00000510187 ZNF207O43670 478 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-213ENST00000510187 ARL3P36405 182 aa12.14□□□□□ -0.47
SQSTM1-213ENST00000510187 LEPP41159 167 aa12.14□□□□□ -0.47
SQSTM1-213ENST00000510187 LCNL1Q6ZST4 164 aa12.14□□□□□ -0.47
SQSTM1-213ENST00000510187 OR4X2Q8NGF9 303 aa12.14□□□□□ -0.47
SQSTM1-213ENST00000510187 OR2K2Q8NGT1 345 aa12.14□□□□□ -0.47
SQSTM1-213ENST00000510187 USMG5Q96IX5 58 aa12.14□□□□□ -0.47
SQSTM1-213ENST00000510187 IGLV2-18A0A075B6J9 118 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms