RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 IGHV3-49A0A0A0MS15 119 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 C9JCJ5 164 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 D6R8Y8 96 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 KRTAP1-1Q07627 177 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 VGLL1Q99990 258 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 PSMB11A5LHX3 300 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 PRSS29PA6NIE9 313 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 TRGV3P03979 118 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 CKS2P33552 79 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 PET117Q6UWS5 81 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 LINC00305Q7Z4B0 112 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 EXOC3-AS1Q8N2X6 119 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 C5orf56Q8N8D9 126 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 VPREB3Q9UKI3 123 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 IGKV3-7A0A075B6H7 116 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 SSBP2P81877 361 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 LINC00322Q6ZN03 302 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 AMN1Q8IY45 258 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 URB1-AS1Q96HZ7 61 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 RPP21Q9H633 154 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 NDUFA4L2Q9NRX3 87 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 AKAP9Q99996 3911 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 TRAV9-1A0A075B6T8 112 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 TRAV41A0A0B4J266 112 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 ZNF562Q6V9R5 426 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 DUX3Q96PT4 197 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 TXNDC17Q9BRA2 123 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 COL6A5A8TX70 2615 aa6.75□□□□□ -1.33
LIMCH1-209ENST00000509277 SMIM27A0A1W2PRY6 76 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 NPIPB5A8MRT5 1133 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 RPL7P18124 248 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 FAM162BQ5T6X4 162 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 ZC2HC1BQ5TFG8 222 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 ZNF502Q8TBZ5 544 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 ESM1Q9NQ30 184 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 TMEM213A2RRL7 107 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 CGB1A6NKQ9 187 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 SIVA1O15304 175 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 P0C879 139 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 TTC32Q5I0X7 151 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 CLEC19AQ6UXS0 136 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 CHAC1Q9BUX1 264 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 PRSS22Q9GZN4 317 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 A6NDX4 124 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 RNASE2P10153 161 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 TWIST1Q15672 202 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 MRPL23Q16540 153 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 Q1RN00 199 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 Q6YL49 198 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 TEX29Q8N6K0 151 aa6.74□□□□□ -1.33
LIMCH1-209ENST00000509277 TRAV8-2A0A0B4J237 113 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 IGHV3-66A0A0C4DH42 116 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 CT45A10P0DMU9 189 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 EMP1P54849 157 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 IGKV1OR2-108A0A075B7D4 117 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 POU2AF1Q16633 256 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 C15orf32Q32M92 178 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 GTSF1Q8WW33 167 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 IFI27L1Q96BM0 104 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 PRELID3AQ96N28 172 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 KIR2DL4Q99706 377 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 MRPL36Q9P0J6 103 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 STAB1Q9NY15 2570 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 TEX22C9J3V5 150 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 MS4A6AQ9H2W1 248 aa6.73□□□□□ -1.33
LIMCH1-209ENST00000509277 IGLV2-8P01709 118 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 ODF1Q14990 250 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 DEFB136Q30KP8 78 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 RBPMS2Q6ZRY4 209 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 NPBQ8NG41 125 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 ZNF747Q9BV97 191 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 PGPEP1Q9NXJ5 209 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 IGKV2D-26A0A0A0MRZ7 120 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 A0A1B0GUT8 65 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 FAM90A9PA6NNJ1 464 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 UFSP1Q6NVU6 142 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 NEGR1Q7Z3B1 354 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 RNF5Q99942 180 aa6.72□□□□□ -1.33
LIMCH1-209ENST00000509277 M0R3E3 92 aa6.71□□□□□ -1.33
LIMCH1-209ENST00000509277 ORM1P02763 201 aa6.71□□□□□ -1.33
LIMCH1-209ENST00000509277 MRGPRG-AS1Q2M3A8 158 aa6.71□□□□□ -1.33
LIMCH1-209ENST00000509277 IGFL4Q6B9Z1 124 aa6.71□□□□□ -1.33
LIMCH1-209ENST00000509277 Q8N6K4 173 aa6.71□□□□□ -1.33
LIMCH1-209ENST00000509277 GPR82Q96P67 336 aa6.71□□□□□ -1.33
LIMCH1-209ENST00000509277 NPIPB6E9PJ23 425 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 CRYGBP07316 175 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 ID1P41134 155 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 RPL11P62913 178 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 NSUN5P1Q3KNT7 163 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 C8orf86Q6ZUL3 223 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 ZNF503Q96F45 646 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 PSG8Q9UQ74 426 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 C1QTNF4Q9BXJ3 329 aa6.71□□□□□ -1.34
LIMCH1-209ENST00000509277 LEPP41159 167 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 RIGQ13278 110 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 C2orf83Q53S99 150 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 CACNG8Q8WXS5 425 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 CHCHD1Q96BP2 118 aaKnown RBP6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 EPDR1Q9UM22 224 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 A6NJY4 79 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms