RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ACANP16112 2415 aa12.36□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 ITPR3Q14573 2671 aa12.36□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 LINC01546A6NGU7 62 aa12.36□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 NPFFR1Q9GZQ6 430 aa12.36□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 TRAV8-2A0A0B4J237 113 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 LMO4P61968 165 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 HSD52Q0P140 79 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 IFI27L1Q96BM0 104 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 ZNF479Q96JC4 524 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 AP1S3Q96PC3 154 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 GTSF1LQ9H1H1 148 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 C11orf21Q9P2W6 132 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 IGHV3OR16-13A0A075B7E8 117 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 IGHV3-74A0A0B4J1X5 117 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 CENPVL3A0A0U1RRI6 287 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 PPIFP30405 207 aaKnown RBP12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 SLC50A1Q9BRV3 221 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 AGPAT4-IT1Q9H0P7 198 aa12.35□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 FLNAP21333 2647 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 IGKV3D-20A0A0C4DH25 116 aa12.34□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 C9orf118A6NHY6 69 aa12.34□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 CCL19Q99731 98 aa12.34□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 EFNA4P52798 201 aa12.34□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 CD300EQ496F6 205 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 BOD1L2Q8IYS8 172 aa12.34□□□□□ -0.43
MSH5-SAPCD1-208ENST00000498473 H3BRM9 83 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 CSPG4Q6UVK1 2322 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 IGHV3-49A0A0A0MS15 119 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TMEM97Q5BJF2 176 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 WFDC3Q8IUB2 231 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 EEF1AKMT3Q96AZ1 226 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 MRAP2Q96G30 205 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 BPESC1Q9GZL8 116 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 MAP1LC3AQ9H492 121 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 U3KQE9 123 aa12.33□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 ZNF207O43670 478 aaKnown RBP12.32□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TNFRSF6BO95407 300 aa12.32□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 GATA1P15976 413 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 C5orf56Q8N8D9 126 aa12.32□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 DKK2Q9UBU2 259 aa12.32□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 OTOGQ6ZRI0 2925 aa12.32□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 NPFFO15130 113 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TCTAP57738 103 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 OR2K2Q8NGT1 345 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TRBV7-1A0A0A6YYK4 115 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 EVI2AP22794 236 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 C8orf86Q6ZUL3 223 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 PGPEP1Q9NXJ5 209 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 ABCA2Q9BZC7 2435 aa12.31□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 GAGE12HA6NDE8 117 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 SMAD7O15105 426 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 SPATA25Q9BR10 227 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 CUBNO60494 3623 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TSPAN13O95857 204 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 FCER1GP30273 86 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 LEPP41159 167 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 Q6ZQT7 251 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 MRPL53Q96EL3 112 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 C18orf15Q96N68 181 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 METTL26Q96S19 204 aa12.3□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 IGLV2-18A0A075B6J9 118 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 IGHV7-4-1A0A0J9YVY3 117 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 IGHV4-39P01824 125 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TRGV3P03979 118 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 C19orf54Q5BKX5 351 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 NXT2Q9NPJ8 142 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 A6NDN8 102 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 OR11H12B2RN74 326 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 J3QR89 54 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 C9orf47Q6ZRZ4 202 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 PCP2Q8IVA1 136 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 OR11H1Q8NG94 326 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 OR11H2Q8NH07 326 aa12.29□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TMEM78Q5T7P6 136 aa12.28□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 TMEM219Q86XT9 240 aa12.28□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 GEMIN7Q9H840 131 aaKnown RBP12.28□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 ZMAT4Q9H898 229 aa12.28□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 CREBBPQ92793 2442 aa12.28□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 SIVA1O15304 175 aa12.27□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 ATP5G2Q06055 141 aa12.27□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 ADAMTSL5Q6ZMM2 481 aa12.27□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 MAPK1IP1LQ8NDC0 245 aa12.27□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 HIF1ANQ9NWT6 349 aa12.27□□□□□ -0.44
MSH5-SAPCD1-208ENST00000498473 ATP5J2P56134 94 aa12.27□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 ODF1Q14990 250 aa12.27□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 FOXI2Q6ZQN5 318 aa12.27□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 Q8N8P6 123 aa12.27□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 OR9G4Q8NGQ1 327 aa12.27□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 PIFOQ8TCI5 191 aa12.27□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 JMJD8Q96S16 334 aa12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 LINC00527Q9UJ94 153 aa12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 HHLA3Q9XRX5 114 aa12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 SONP18583 2426 aaKnown RBP12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 NRACQ8N912 160 aa12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 GLMPQ8WWB7 406 aa12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 TMEM158Q8WZ71 300 aa12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 C20orf173Q96LM9 149 aa12.26□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 TRAV41A0A0B4J266 112 aa12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 TEX48A0A1B0GUV7 120 aa12.25□□□□□ -0.45
MSH5-SAPCD1-208ENST00000498473 NMUP48645 174 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms