RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGLL5B9A064 214 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 RNF125Q96EQ8 232 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 KMT2EQ8IZD2 1858 aa8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 LINC01549A6NIU2 74 aa8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TMEM95Q3KNT9 176 aa8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 DDB2Q92466 427 aa8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C17orf77Q96MU5 243 aa8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PTPRBP23467 1997 aa8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TMEM170BQ5T4T1 132 aa8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SP5Q6BEB4 398 aaPredicted RBP8.48□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IGHV4-39P01824 125 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IFITM1P13164 125 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PRR20EP86478 221 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PRR20CP86479 221 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PRR20DP86480 221 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PRR20BP86481 221 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PRR20AP86496 221 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 NEGR1Q7Z3B1 354 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C16orf92Q96LL3 132 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 GFRA4Q9GZZ7 299 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SIGLEC8Q9NYZ4 499 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IGHV4-30-2A0A087WSY4 118 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TMEM8BA6NDV4 472 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 LGALS3P17931 250 aaKnown RBP8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 CT83Q5H943 113 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IGKV2-40A0A087WW87 121 aaPredicted RBP8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C9JAW5 83 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 ATP6V0E1O15342 81 aa8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IGKV2D-40P01614 121 aaPredicted RBP8.47□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 CGB3P0DN86 165 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 CGB7P0DN87 165 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TMEM30BQ3MIR4 351 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 ZNF562Q6V9R5 426 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TMEM158Q8WZ71 300 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TRBV25-1A0A075B6N4 114 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TMEM213A2RRL7 107 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 NPFFO15130 113 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 MEIG1Q5JSS6 88 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 Q8N7P7 452 aa8.46□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 DSCAML1Q8TD84 2053 aa8.46□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 RRN3P1Q2M238 152 aa8.46□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 GDF5OSQ5U4N7 250 aa8.46□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 DYNAPQ8N1N2 210 aa8.46□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TEP1Q99973 2627 aaKnown RBP8.46□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 FOXI1Q12951 378 aa8.46□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 SLC25A39Q9BZJ4 359 aaPredicted RBP8.46□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ZNF688P0C7X2 276 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 IGHV4-38-2P0DP08 117 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ZNF492Q9P255 531 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 FLNAP21333 2647 aaKnown RBP8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 NPIPB5A8MRT5 1133 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 C3orf36Q3SXR2 165 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 SPANXB1Q9NS25 103 aaPredicted RBP8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ITPR1Q14643 2758 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 LINC01548A6NM66 108 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 FCN3O75636 299 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 MT-ATP8P03928 68 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 RNF182Q8N6D2 247 aa8.45□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 DCHS2Q6V1P9 2916 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 SVEP1Q4LDE5 3571 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 FNDC10F2Z333 226 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 HLA-DMBP28068 263 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 KAAG1Q9UBP8 84 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 Q86TA4 180 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 METTL26Q96S19 204 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 SPANXA1Q9NS26 97 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ITPR3Q14573 2671 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 IGHV3OR16-12A0A075B7B8 117 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TRAV2A0A0B4J234 112 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TRBV7-9A0A0J9YWB2 115 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 SPRY2O43597 315 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 BLCAPP62952 87 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 FAM104BQ5XKR9 115 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 IGF2BP2-AS1Q96M15 143 aa8.44□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 LTAP01374 205 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 UFSP1Q6NVU6 142 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 YAE1D1Q9NRH1 226 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 DLX6P56179 175 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 C2orf91Q6ZV80 131 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 RAX2Q96IS3 184 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 LINC01559Q495D7 138 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ERG28Q9UKR5 140 aa8.43□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 ZANQ9Y493 2812 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 CRXO43186 299 aaPredicted RBP8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 IGLV1-47P01700 117 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 PLNP26678 52 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 DEFB1P60022 68 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 SRSF1Q07955 248 aaKnown RBP eCLIP8.42□□□□□ -1.067e-7■■■□□ 15.3
MSH5-SAPCD1-207ENST00000493662 C9orf153Q5TBE3 101 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 Q6ZUT4 128 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 C3orf56Q8N813 242 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 GTSF1Q8WW33 167 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 MRPL35Q9NZE8 188 aaKnown RBP8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 TMEM78Q5T7P6 136 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 PTH2Q96A98 100 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 DUX3Q96PT4 197 aa8.42□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 MRPL51Q4U2R6 128 aaKnown RBP8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 C8orf46Q8TAG6 207 aa8.41□□□□□ -1.06
MSH5-SAPCD1-207ENST00000493662 NPYP01303 97 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 331.2 ms