RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 C11orf72Q8NBR9 251 aa14.11□□□□□ -0.15
COL9A3-204ENST00000463487 ZC2HC1AQ96GY0 325 aa14.1□□□□□ -0.15
COL9A3-204ENST00000463487 EIF5A2Q9GZV4 153 aaKnown RBP14.1□□□□□ -0.15
COL9A3-204ENST00000463487 TP53TG3Q9ULZ0 132 aa14.1□□□□□ -0.15
COL9A3-204ENST00000463487 SMIM12Q96EX1 92 aa14.09□□□□□ -0.15
COL9A3-204ENST00000463487 SPXQ9BT56 116 aa14.09□□□□□ -0.15
COL9A3-204ENST00000463487 TRGV1A0A0A0MS02 117 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 GAGE12BA1L429 117 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 TMEM250H0YL14 139 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 GAGE7O76087 117 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 ORM1P02763 201 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 ATP5G1P05496 136 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 GAGE12FP0CL80 117 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 GAGE12GP0CL81 117 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 GAGE12IP0CL82 117 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 HTN3P15516 51 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 GNG4P50150 75 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 TCTAP57738 103 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 LGALS9BQ3B8N2 356 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 ZNF506Q5JVG8 444 aa14.08□□□□□ -0.16
COL9A3-204ENST00000463487 DNAH7Q8WXX0 4024 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 TRGV2A0A075B6R0 118 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 TYMSP04818 313 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 RAB14P61106 215 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 CENPWQ5EE01 88 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 TOR2AQ5JU69 321 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 NHLRC2Q8NBF2 726 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 FAM210BQ96KR6 192 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 FAM210AQ96ND0 272 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 DERL1Q9BUN8 251 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 MDFICQ9P1T7 246 aa14.07□□□□□ -0.16
COL9A3-204ENST00000463487 IGHV3-16A0A0C4DH30 117 aa14.06□□□□□ -0.16
COL9A3-204ENST00000463487 B4DEV8 164 aa14.06□□□□□ -0.16
COL9A3-204ENST00000463487 SPINK4O60575 86 aa14.06□□□□□ -0.16
COL9A3-204ENST00000463487 SH2D1AO60880 128 aa14.06□□□□□ -0.16
COL9A3-204ENST00000463487 NDUFS6O75380 124 aaKnown RBP14.06□□□□□ -0.16
COL9A3-204ENST00000463487 S100A4P26447 101 aaKnown RBP14.06□□□□□ -0.16
COL9A3-204ENST00000463487 ZNF674Q2M3X9 581 aa14.06□□□□□ -0.16
COL9A3-204ENST00000463487 MLST8Q9BVC4 326 aa14.06□□□□□ -0.16
COL9A3-204ENST00000463487 BIN3Q9NQY0 253 aa14.06□□□□□ -0.16
COL9A3-204ENST00000463487 IGLL5B9A064 214 aa14.05□□□□□ -0.16
COL9A3-204ENST00000463487 GNRH2O43555 120 aa14.05□□□□□ -0.16
COL9A3-204ENST00000463487 Q6ZTI0 123 aa14.05□□□□□ -0.16
COL9A3-204ENST00000463487 LINC00612Q8N6U2 182 aa14.05□□□□□ -0.16
COL9A3-204ENST00000463487 ASIPP42127 132 aa14.04□□□□□ -0.16
COL9A3-204ENST00000463487 C18orf15Q96N68 181 aa14.04□□□□□ -0.16
COL9A3-204ENST00000463487 C11orf21Q9P2W6 132 aa14.04□□□□□ -0.16
COL9A3-204ENST00000463487 F5H768 121 aa14.03□□□□□ -0.16
COL9A3-204ENST00000463487 M0R2P5 195 aa14.03□□□□□ -0.16
COL9A3-204ENST00000463487 MGST1P10620 155 aaKnown RBP14.03□□□□□ -0.16
COL9A3-204ENST00000463487 PRR27Q6MZM9 219 aa14.03□□□□□ -0.16
COL9A3-204ENST00000463487 DAZAP1Q96EP5 407 aaKnown RBP14.03□□□□□ -0.16
COL9A3-204ENST00000463487 MRPL16Q9NX20 251 aaKnown RBP14.03□□□□□ -0.16
COL9A3-204ENST00000463487 IGKV3D-20A0A0C4DH25 116 aa14.02□□□□□ -0.17
COL9A3-204ENST00000463487 M0R036 132 aa14.02□□□□□ -0.17
COL9A3-204ENST00000463487 CRIP1P50238 77 aa14.02□□□□□ -0.17
COL9A3-204ENST00000463487 OR5I1Q13606 314 aa14.02□□□□□ -0.17
COL9A3-204ENST00000463487 LINC01559Q495D7 138 aa14.02□□□□□ -0.17
COL9A3-204ENST00000463487 NDUFAF3Q9BU61 184 aa14.02□□□□□ -0.17
COL9A3-204ENST00000463487 PARLQ9H300 379 aa14.02□□□□□ -0.17
COL9A3-204ENST00000463487 IGHV4-4A0A075B6R2 117 aa14.01□□□□□ -0.17
COL9A3-204ENST00000463487 RAB19A4D1S5 217 aa14.01□□□□□ -0.17
COL9A3-204ENST00000463487 KRBOX1C9JBD0 128 aa14.01□□□□□ -0.17
COL9A3-204ENST00000463487 C9JCJ5 164 aa14.01□□□□□ -0.17
COL9A3-204ENST00000463487 CEBPGP53567 150 aa14.01□□□□□ -0.17
COL9A3-204ENST00000463487 PCNPQ8WW12 178 aaKnown RBP14.01□□□□□ -0.17
COL9A3-204ENST00000463487 PEA15Q15121 130 aa14□□□□□ -0.17
COL9A3-204ENST00000463487 RASL10AQ92737 203 aa14□□□□□ -0.17
COL9A3-204ENST00000463487 SMDT1Q9H4I9 107 aa14□□□□□ -0.17
COL9A3-204ENST00000463487 IL36BQ9NZH7 164 aa13.99□□□□□ -0.17
COL9A3-204ENST00000463487 ZNF876PQ49A33 203 aa13.98□□□□□ -0.17
COL9A3-204ENST00000463487 DNLZQ5SXM8 178 aa13.98□□□□□ -0.17
COL9A3-204ENST00000463487 C15orf53Q8NAA6 179 aa13.98□□□□□ -0.17
COL9A3-204ENST00000463487 C9orf85Q96MD7 179 aa13.98□□□□□ -0.17
COL9A3-204ENST00000463487 TRBV20OR9-2A0A075B6H5 130 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 TMSB15BA0A087X1C1 80 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 XKRY2A2RUG3 117 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 IGLV2-8P01709 118 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 CXCL1P09341 107 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 RNASE3P12724 160 aaKnown RBP13.97□□□□□ -0.17
COL9A3-204ENST00000463487 SLAQ13239 276 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 SYT8Q8NBV8 401 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 PTH2Q96A98 100 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 SMIM7Q9BQ49 75 aa13.97□□□□□ -0.17
COL9A3-204ENST00000463487 H3BVH4 76 aa13.96□□□□□ -0.17
COL9A3-204ENST00000463487 P01737 135 aa13.96□□□□□ -0.17
COL9A3-204ENST00000463487 RPS20P60866 119 aaKnown RBP13.96□□□□□ -0.17
COL9A3-204ENST00000463487 PIK3CD-AS1Q5SR53 167 aa13.96□□□□□ -0.17
COL9A3-204ENST00000463487 TMEM88Q6PEY1 159 aa13.96□□□□□ -0.17
COL9A3-204ENST00000463487 TRAV4A0A0B4J268 109 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 GRIFINA4D1Z8 144 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 ZNF727A8MUV8 499 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 CIDEAO60543 219 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 SRP19P09132 144 aaKnown RBP13.95□□□□□ -0.18
COL9A3-204ENST00000463487 MED14OSP0DP75 135 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 FAM74A3Q4VXF1 159 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 OR4C5Q8NGB2 326 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 APLNQ9ULZ1 77 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 PHLDA3Q9Y5J5 127 aa13.95□□□□□ -0.18
COL9A3-204ENST00000463487 LY96Q9Y6Y9 160 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms