RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 CTRLP40313 264 aa12.88□□□□□ -0.35
PTPRC-206ENST00000413409 EGFEM1PQ0D2K5 195 aa12.88□□□□□ -0.35
PTPRC-206ENST00000413409 ERCC8Q13216 396 aa12.88□□□□□ -0.35
PTPRC-206ENST00000413409 C18orf32Q8TCD1 76 aa12.88□□□□□ -0.35
PTPRC-206ENST00000413409 ALKBH7Q9BT30 221 aaPredicted RBP12.88□□□□□ -0.35
PTPRC-206ENST00000413409 NRN1Q9NPD7 142 aa12.88□□□□□ -0.35
PTPRC-206ENST00000413409 F2Z2F3 143 aa12.87□□□□□ -0.35
PTPRC-206ENST00000413409 OVOL1O14753 267 aa12.87□□□□□ -0.35
PTPRC-206ENST00000413409 NHLRC4P0CG21 123 aaPredicted RBP12.87□□□□□ -0.35
PTPRC-206ENST00000413409 ZNF80P51504 273 aaPredicted RBP12.87□□□□□ -0.35
PTPRC-206ENST00000413409 HIST1H1AQ02539 215 aaPredicted RBP12.87□□□□□ -0.35
PTPRC-206ENST00000413409 LINC01559Q495D7 138 aa12.87□□□□□ -0.35
PTPRC-206ENST00000413409 SSBP4Q9BWG4 385 aaPredicted RBP12.87□□□□□ -0.35
PTPRC-206ENST00000413409 RHPN1-AS1Q9BWJ2 59 aa12.87□□□□□ -0.35
PTPRC-206ENST00000413409 AGPAT4-IT1Q9H0P7 198 aa12.87□□□□□ -0.35
PTPRC-206ENST00000413409 PCP4L1A6NKN8 68 aa12.86□□□□□ -0.35
PTPRC-206ENST00000413409 FABP5P3A8MUU1 101 aa12.86□□□□□ -0.35
PTPRC-206ENST00000413409 RPLP1P05386 114 aaKnown RBP12.86□□□□□ -0.35
PTPRC-206ENST00000413409 ARMS2P0C7Q2 107 aa12.86□□□□□ -0.35
PTPRC-206ENST00000413409 PRB4P10163 310 aaPredicted RBP12.86□□□□□ -0.35
PTPRC-206ENST00000413409 DMRTA1Q5VZB9 504 aa12.86□□□□□ -0.35
PTPRC-206ENST00000413409 ZNF738Q8NE65 137 aa12.86□□□□□ -0.35
PTPRC-206ENST00000413409 UBE2E2Q96LR5 201 aa12.86□□□□□ -0.35
PTPRC-206ENST00000413409 PCLOQ9Y6V0 5065 aa12.85□□□□□ -0.35
PTPRC-206ENST00000413409 LOC102724200A0A096LPH7 203 aaPredicted RBP12.85□□□□□ -0.35
PTPRC-206ENST00000413409 IGLC6P0CF74 106 aa12.85□□□□□ -0.35
PTPRC-206ENST00000413409 TM4SF20Q53R12 229 aa12.85□□□□□ -0.35
PTPRC-206ENST00000413409 C10orf99Q6UWK7 81 aa12.85□□□□□ -0.35
PTPRC-206ENST00000413409 MUC7Q8TAX7 377 aa12.85□□□□□ -0.35
PTPRC-206ENST00000413409 C20orf173Q96LM9 149 aa12.85□□□□□ -0.35
PTPRC-206ENST00000413409 GSN-AS1Q9NRJ2 163 aa12.85□□□□□ -0.35
PTPRC-206ENST00000413409 LGALS9O00182 355 aa12.84□□□□□ -0.35
PTPRC-206ENST00000413409 ZNF493Q6ZR52 646 aa12.84□□□□□ -0.35
PTPRC-206ENST00000413409 LINC00477Q96M19 166 aa12.84□□□□□ -0.35
PTPRC-206ENST00000413409 SAMD10Q9BYL1 202 aa12.84□□□□□ -0.35
PTPRC-206ENST00000413409 RYR1P21817 5038 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 TRBV7-9A0A0J9YWB2 115 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 A0A1W2PRX2 142 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 IQCJQ1A5X6 159 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 CDPF1Q6NVV7 123 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 FER1L6-AS1Q8NA97 138 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 OR10J6PQ8NGY7 276 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 RCHY1Q96PM5 261 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 CNFNQ9BYD5 112 aa12.83□□□□□ -0.36
PTPRC-206ENST00000413409 TMEM213A2RRL7 107 aa12.82□□□□□ -0.36
PTPRC-206ENST00000413409 ZNF324O75467 553 aaPredicted RBP12.82□□□□□ -0.36
PTPRC-206ENST00000413409 LYZL1Q6UWQ5 148 aa12.82□□□□□ -0.36
PTPRC-206ENST00000413409 TMSB15BA0A087X1C1 80 aa12.81□□□□□ -0.36
PTPRC-206ENST00000413409 GPX1P07203 203 aa12.81□□□□□ -0.36
PTPRC-206ENST00000413409 Q6ZWC4 215 aa12.81□□□□□ -0.36
PTPRC-206ENST00000413409 ORM1P02763 201 aa12.8□□□□□ -0.36
PTPRC-206ENST00000413409 ID1P41134 155 aa12.8□□□□□ -0.36
PTPRC-206ENST00000413409 AMTP48728 403 aa12.8□□□□□ -0.36
PTPRC-206ENST00000413409 TPPP3Q9BW30 176 aa12.8□□□□□ -0.36
PTPRC-206ENST00000413409 IGHV4OR15-8A0A075B7B6 117 aa12.79□□□□□ -0.36
PTPRC-206ENST00000413409 A0A087WW49 117 aa12.79□□□□□ -0.36
PTPRC-206ENST00000413409 APRG1Q8IVJ8 170 aa12.79□□□□□ -0.36
PTPRC-206ENST00000413409 CHCHD1Q96BP2 118 aaKnown RBP12.79□□□□□ -0.36
PTPRC-206ENST00000413409 FAM19A4Q96LR4 140 aa12.79□□□□□ -0.36
PTPRC-206ENST00000413409 RPL11P62913 178 aaKnown RBP12.78□□□□□ -0.36
PTPRC-206ENST00000413409 ZNF575Q86XF7 245 aa12.78□□□□□ -0.36
PTPRC-206ENST00000413409 OR8A1Q8NGG7 326 aa12.78□□□□□ -0.36
PTPRC-206ENST00000413409 DCANP1Q8TF63 244 aa12.78□□□□□ -0.36
PTPRC-206ENST00000413409 NAGKQ9UJ70 344 aa12.78□□□□□ -0.36
PTPRC-206ENST00000413409 HSBP1O75506 76 aa12.77□□□□□ -0.37
PTPRC-206ENST00000413409 PMCHP20382 165 aa12.77□□□□□ -0.37
PTPRC-206ENST00000413409 ZFAND2AQ8N6M9 145 aa12.77□□□□□ -0.37
PTPRC-206ENST00000413409 PLECQ15149 4684 aaKnown RBP12.76□□□□□ -0.37
PTPRC-206ENST00000413409 PKIAP61925 76 aa12.76□□□□□ -0.37
PTPRC-206ENST00000413409 FAM104BQ5XKR9 115 aa12.76□□□□□ -0.37
PTPRC-206ENST00000413409 RNASEKQ6P5S7 137 aaKnown RBP12.76□□□□□ -0.37
PTPRC-206ENST00000413409 C4orf3Q8WVX3 66 aa12.76□□□□□ -0.37
PTPRC-206ENST00000413409 TRAV21A0A0B4J279 112 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 IGKV3D-20A0A0C4DH25 116 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 PF4P02776 101 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 EDN2P20800 178 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 SYNJ2BPP57105 145 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 TCTEX1D4Q5JR98 221 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 NIT1Q86X76 327 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 ODF3Q96PU9 254 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 TMEM191AQ9H0A3 160 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 C11orf21Q9P2W6 132 aa12.75□□□□□ -0.37
PTPRC-206ENST00000413409 C2orf70A6NJV1 201 aa12.74□□□□□ -0.37
PTPRC-206ENST00000413409 TSTD3H0UI37 97 aa12.74□□□□□ -0.37
PTPRC-206ENST00000413409 SCGB1D1O95968 90 aa12.74□□□□□ -0.37
PTPRC-206ENST00000413409 RAB4AP20338 218 aa12.74□□□□□ -0.37
PTPRC-206ENST00000413409 PRR9Q5T870 116 aa12.74□□□□□ -0.37
PTPRC-206ENST00000413409 URB1-AS1Q96HZ7 61 aa12.74□□□□□ -0.37
PTPRC-206ENST00000413409 MS4A6AQ9H2W1 248 aa12.74□□□□□ -0.37
PTPRC-206ENST00000413409 K7EQG2 157 aa12.73□□□□□ -0.37
PTPRC-206ENST00000413409 SNAI2O43623 268 aa12.73□□□□□ -0.37
PTPRC-206ENST00000413409 OR5AL1P0C617 328 aa12.73□□□□□ -0.37
PTPRC-206ENST00000413409 IGHV4-4A0A075B6R2 117 aa12.72□□□□□ -0.37
PTPRC-206ENST00000413409 LINC01619G3V211 115 aa12.72□□□□□ -0.37
PTPRC-206ENST00000413409 ZNF705DP0CH99 300 aaPredicted RBP12.72□□□□□ -0.37
PTPRC-206ENST00000413409 ZNF705BP0CI00 300 aaPredicted RBP12.72□□□□□ -0.37
PTPRC-206ENST00000413409 MED14OSP0DP75 135 aa12.72□□□□□ -0.37
PTPRC-206ENST00000413409 CACNG7P62955 275 aa12.72□□□□□ -0.37
PTPRC-206ENST00000413409 TWIST1Q15672 202 aa12.72□□□□□ -0.37
PTPRC-206ENST00000413409 TEX43Q6ZNM6 134 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms