RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 LINC00694P0DN24 101 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 KIR3DS1Q14943 382 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 FAM162BQ5T6X4 162 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 NIPSNAP3BQ9BS92 247 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 NDFIP1Q9BT67 221 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 PARLQ9H300 379 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 IL36BQ9NZH7 164 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 PCP4L1A6NKN8 68 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 M0R2Z0 102 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 RNASE3P12724 160 aaKnown RBP4.99□□□□□ -1.61
LIMA1-202ENST00000394943 RPL35AP18077 110 aaKnown RBP4.99□□□□□ -1.61
LIMA1-202ENST00000394943 PCNPQ8WW12 178 aaKnown RBP4.99□□□□□ -1.61
LIMA1-202ENST00000394943 LINC00479Q96M42 142 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 CARHSP1Q9Y2V2 147 aaKnown RBP4.99□□□□□ -1.61
LIMA1-202ENST00000394943 TYMSP04818 313 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 UBE2G2P60604 165 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 SRSF3P84103 164 aaKnown RBP4.99□□□□□ -1.61
LIMA1-202ENST00000394943 OR11H2Q8NH07 326 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 FRZBQ92765 325 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 TREM1Q9NP99 234 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 OSTCQ9NRP0 149 aa4.99□□□□□ -1.61
LIMA1-202ENST00000394943 NOTCH3Q9UM47 2321 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 TRAV8-1A0A0A6YYK1 113 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 CTRLP40313 264 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 RPS20P60866 119 aaKnown RBP4.98□□□□□ -1.61
LIMA1-202ENST00000394943 LINC01551Q86U37 167 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 FRAS1Q86XX4 4008 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 C3orf84H3BNL1 204 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 SH2D1AO60880 128 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 DEFB135Q30KP9 77 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 CENPWQ5EE01 88 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 Q8TAT8 98 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 ISOC2Q96AB3 205 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 DERL1Q9BUN8 251 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 SDF2L1Q9HCN8 221 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 DNAH17Q9UFH2 4485 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 AZU1P20160 251 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 ZFP2Q6ZN57 461 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 WWC2-AS2Q96NR7 200 aa4.98□□□□□ -1.61
LIMA1-202ENST00000394943 RS1O15537 224 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 XCL2Q9UBD3 114 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 CBY3A6NI87 242 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 GPX1P07203 203 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 PNRC1Q12796 327 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-202ENST00000394943 C12orf74Q32Q52 190 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 TOR2AQ5JU69 321 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 CST9LP1Q5W188 147 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 IMMP2LQ96T52 175 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 SEC11CQ9BY50 192 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 RETNQ9HD89 108 aa4.97□□□□□ -1.61
LIMA1-202ENST00000394943 UBE2G1P62253 170 aa4.96□□□□□ -1.61
LIMA1-202ENST00000394943 ZNF415Q09FC8 603 aa4.96□□□□□ -1.61
LIMA1-202ENST00000394943 Q6ZQT7 251 aa4.96□□□□□ -1.61
LIMA1-202ENST00000394943 PRNTQ86SH4 94 aa4.96□□□□□ -1.61
LIMA1-202ENST00000394943 BAGE2Q86Y30 109 aa4.96□□□□□ -1.61
LIMA1-202ENST00000394943 TMEM242Q9NWH2 141 aa4.96□□□□□ -1.61
LIMA1-202ENST00000394943 NAT8Q9UHE5 227 aa4.96□□□□□ -1.61
LIMA1-202ENST00000394943 ADCYAP1P18509 176 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 TIRAPP58753 221 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 OCC1Q8TAD7 63 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 KIF25-AS1Q9Y6Z4 181 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 AGRNO00468 2067 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 SORL1Q92673 2214 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 SACSQ9NZJ4 4579 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 WNK1Q9H4A3 2382 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 TRAV12-2A0A075B6T6 113 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 TRAV34A0A0B4J273 112 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 RNASE4P34096 147 aaKnown RBP4.96□□□□□ -1.62
LIMA1-202ENST00000394943 V9GYV3 84 aa4.96□□□□□ -1.62
LIMA1-202ENST00000394943 SMIM27A0A1W2PRY6 76 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 SNRPCP09234 159 aaKnown RBP4.95□□□□□ -1.62
LIMA1-202ENST00000394943 GNG4P50150 75 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 RPL23P62829 140 aaKnown RBP4.95□□□□□ -1.62
LIMA1-202ENST00000394943 RRN3P1Q2M238 152 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 DEFB121Q5J5C9 76 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 SFRP2Q96HF1 295 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 TRAV4A0A0B4J268 109 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 TRAV12-3A0A0B4J271 114 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 A0A0J9YWU9 116 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 TMEM218A2RU14 115 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 B4DEV8 164 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 M0R2P5 195 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 RAB14P61106 215 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 CELA1Q9UNI1 258 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 TIMM8BQ9Y5J9 83 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-202ENST00000394943 A0A087WWC5 75 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 SPART-AS1P0CW21 52 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 PRR27Q6MZM9 219 aa4.95□□□□□ -1.62
LIMA1-202ENST00000394943 LINC00315P59091 139 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 NUDT10Q8NFP7 164 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 NUDT11Q96G61 164 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 MGAM2Q2M2H8 2515 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 TRAV26-1A0A087WT03 109 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 ZNF705GA8MUZ8 300 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-202ENST00000394943 F2Z2F3 143 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 FXYD7P58549 80 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 CACNG7P62955 275 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 TMEM241Q24JQ0 296 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 OR10G8Q8NGN5 311 aa4.94□□□□□ -1.62
LIMA1-202ENST00000394943 NACAE9PAV3 2078 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms