RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 NXT2Q9NPJ8 142 aaKnown RBP6.85□□□□□ -1.31
UBR4-201ENST00000375218 IGLL5B9A064 214 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 NUPR1O60356 82 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 GP1BBP13224 206 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 RPL23P62829 140 aaKnown RBP6.85□□□□□ -1.31
UBR4-201ENST00000375218 HDHD3Q9BSH5 251 aaPredicted RBP6.85□□□□□ -1.31
UBR4-201ENST00000375218 MDFIC2A0A1B0GVS7 189 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 TRBV12-3P01733 135 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 BGLAPP02818 100 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 SYNJ2BPP57105 145 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 TEN1Q86WV5 123 aa6.85□□□□□ -1.31
UBR4-201ENST00000375218 TRAV2A0A0B4J234 112 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 ZNF503-AS2A6NEH8 195 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 IGHV3-9P01782 118 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 IGHG1P01857 330 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 UBE2G1P62253 170 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 A6NIN4 97 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 CDK2AP2O75956 126 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 LINC00479Q96M42 142 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 NPCDR1Q9BY65 106 aa6.84□□□□□ -1.31
UBR4-201ENST00000375218 K7EM74 188 aa6.84□□□□□ -1.32
UBR4-201ENST00000375218 CHCHD10Q8WYQ3 142 aaPredicted RBP6.84□□□□□ -1.32
UBR4-201ENST00000375218 RIF1Q5UIP0 2472 aaKnown RBP6.84□□□□□ -1.32
UBR4-201ENST00000375218 ATRXP46100 2492 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 GNG13Q9P2W3 67 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 IGHV3-7P01780 117 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 CEND1Q8N111 149 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 NKAPP1Q8N9T2 125 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 IGLV9-49A0A0B4J1Y8 123 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 IGFBP7Q16270 282 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 CYTL1Q9NRR1 136 aa6.83□□□□□ -1.32
UBR4-201ENST00000375218 RP1L1Q8IWN7 2480 aaPredicted RBP6.83□□□□□ -1.32
UBR4-201ENST00000375218 DNAJC13O75165 2243 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 PIPP12273 146 aaPredicted RBP6.82□□□□□ -1.32
UBR4-201ENST00000375218 BRWD1-AS2P59051 145 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 TRBV27A0A0K0K1C4 114 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 RNF185Q96GF1 192 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 ZNF747Q9BV97 191 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 CNOT1A5YKK6 2376 aaKnown RBP6.82□□□□□ -1.32
UBR4-201ENST00000375218 IGKV1-27A0A075B6S5 117 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 Q6ZRM9 215 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.82□□□□□ -1.32
UBR4-201ENST00000375218 FAM57AQ8TBR7 257 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 TOMM6Q96B49 74 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 SDF2L1Q9HCN8 221 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 TMEM242Q9NWH2 141 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 SPRR3Q9UBC9 169 aa6.82□□□□□ -1.32
UBR4-201ENST00000375218 IGLV3-32A0A0A0MS00 114 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 ZNF324O75467 553 aaPredicted RBP6.81□□□□□ -1.32
UBR4-201ENST00000375218 S100A4P26447 101 aaKnown RBP6.81□□□□□ -1.32
UBR4-201ENST00000375218 SFTA2Q6UW10 78 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 GGNQ86UU5 652 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 TMEM61Q8N0U2 210 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 CELA1Q9UNI1 258 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 TRAPPC1Q9Y5R8 145 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 NCOR2Q9Y618 2525 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 CCL3P10147 92 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 ZNF329Q86UD4 541 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 NFE4Q86UQ8 179 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 SLC25A15Q9Y619 301 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 IL5P05113 134 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 KNTC1P50748 2209 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 FAM186AA6NE01 2351 aa6.81□□□□□ -1.32
UBR4-201ENST00000375218 SERF1AO75920 110 aa6.8□□□□□ -1.32
UBR4-201ENST00000375218 IGHG2P01859 326 aa6.8□□□□□ -1.32
UBR4-201ENST00000375218 RNASE6Q93091 150 aaKnown RBP6.8□□□□□ -1.32
UBR4-201ENST00000375218 SPTBN2O15020 2390 aa6.8□□□□□ -1.32
UBR4-201ENST00000375218 SNRPGP15A8MWD9 76 aa6.8□□□□□ -1.32
UBR4-201ENST00000375218 PPP1R3DO95685 299 aa6.8□□□□□ -1.32
UBR4-201ENST00000375218 C11orf21Q9P2W6 132 aa6.8□□□□□ -1.32
UBR4-201ENST00000375218 UBE2L3P68036 154 aaKnown RBP6.8□□□□□ -1.32
UBR4-201ENST00000375218 FP248Q71RG6 208 aaPredicted RBP6.8□□□□□ -1.32
UBR4-201ENST00000375218 BUB1B-PAK6H3BSN5 160 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 C3orf79P0CE67 100 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 RPL30P62888 115 aaKnown RBP6.79□□□□□ -1.32
UBR4-201ENST00000375218 SOSTDC1Q6X4U4 206 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 CYB561D1Q8N8Q1 229 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 Q8N976 141 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 ZNF286AQ9HBT8 521 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 CMC2Q9NRP2 79 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 HIGD1BQ9P298 99 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 TRRAPQ9Y4A5 3859 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 IGHV6-1A0A0B4J1U7 121 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 BMPR1BO00238 502 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 BSPH1Q075Z2 132 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 TLN1Q9Y490 2541 aaKnown RBP6.79□□□□□ -1.32
UBR4-201ENST00000375218 NXPH4O95158 308 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 QRFPP83859 136 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 MSRB1Q9NZV6 116 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 TRGV5A0A0B4J1U4 118 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 LOC107984156A0A0G2JMH3 177 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 FUSP35637 526 aaKnown RBP eCLIP6.79□□□□□ -1.32
UBR4-201ENST00000375218 EBI3Q14213 229 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 ODF3L2Q3SX64 289 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 ARL17AQ8IVW1 177 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 DAND5Q8N907 189 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 MPLKIPQ8TAP9 179 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 Q96M85 177 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 RABAC1Q9UI14 185 aa6.79□□□□□ -1.32
UBR4-201ENST00000375218 SHANK1Q9Y566 2161 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms