RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 IGLC6P0CF74 106 aa13.77□□□□□ -0.21
CLN3-204ENST00000357857 COX19Q49B96 90 aa13.77□□□□□ -0.21
CLN3-204ENST00000357857 FER1L6-AS1Q8NA97 138 aa13.77□□□□□ -0.21
CLN3-204ENST00000357857 VWFP04275 2813 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 ZNF324O75467 553 aaPredicted RBP13.76□□□□□ -0.21
CLN3-204ENST00000357857 IGLL1P15814 213 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 ANXA2RQ3ZCQ2 193 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 MUC21Q5SSG8 566 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 RASL11AQ6T310 242 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 LYZL1Q6UWQ5 148 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 A0A1B0GUT8 65 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 A0A1B0GXF2 115 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 WDR73Q6P4I2 378 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 TRPT1Q86TN4 253 aaKnown RBP13.76□□□□□ -0.21
CLN3-204ENST00000357857 BORCS7Q96B45 105 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 GNB1LQ9BYB4 327 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 WFDC10AQ9H1F0 79 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 TRAPPC1Q9Y5R8 145 aa13.76□□□□□ -0.21
CLN3-204ENST00000357857 SNURFLB1AK76 121 aa13.75□□□□□ -0.21
CLN3-204ENST00000357857 ARMS2P0C7Q2 107 aa13.75□□□□□ -0.21
CLN3-204ENST00000357857 CTRLP40313 264 aa13.75□□□□□ -0.21
CLN3-204ENST00000357857 RAB5BP61020 215 aa13.75□□□□□ -0.21
CLN3-204ENST00000357857 NOTCH3Q9UM47 2321 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 CRXO43186 299 aaPredicted RBP13.74□□□□□ -0.21
CLN3-204ENST00000357857 RAB4BP61018 213 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 HBBP68871 147 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 RIGQ13278 110 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 FAM159AQ6UWV7 190 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 TMEM136Q6ZRR5 245 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 GTSCR1Q86UQ5 136 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 ZFP82Q8N141 532 aa13.74□□□□□ -0.21
CLN3-204ENST00000357857 WIPF1O43516 503 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 CAMPP49913 170 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 FABP9Q0Z7S8 132 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 FRZBQ92765 325 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 KCNS1Q96KK3 526 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 F2Z2F3 143 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 PHOX2AO14813 284 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 MT-ND6P03923 174 aa13.73□□□□□ -0.21
CLN3-204ENST00000357857 STAB1Q9NY15 2570 aa13.72□□□□□ -0.21
CLN3-204ENST00000357857 HLA-DQA1P01909 254 aa13.72□□□□□ -0.21
CLN3-204ENST00000357857 AMBPP02760 352 aa13.72□□□□□ -0.21
CLN3-204ENST00000357857 ASIPP42127 132 aa13.72□□□□□ -0.21
CLN3-204ENST00000357857 MRPL18Q9H0U6 180 aaKnown RBP13.72□□□□□ -0.21
CLN3-204ENST00000357857 A0A1B0GW15 77 aa13.71□□□□□ -0.21
CLN3-204ENST00000357857 GNRH2O43555 120 aa13.71□□□□□ -0.21
CLN3-204ENST00000357857 TDRG1Q3Y452 100 aa13.71□□□□□ -0.21
CLN3-204ENST00000357857 IGHV1OR15-1A0A075B7D0 117 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 MUC21A0A0G2JKD1 596 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 MUC21A0A140T8X8 626 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 H3BVH4 76 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 RBMY1A1P0DJD3 496 aaKnown RBP13.7□□□□□ -0.22
CLN3-204ENST00000357857 RBMY1CP0DJD4 496 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 S100A4P26447 101 aaKnown RBP13.7□□□□□ -0.22
CLN3-204ENST00000357857 NUTF2P61970 127 aaKnown RBP13.7□□□□□ -0.22
CLN3-204ENST00000357857 RBMY1FQ15415 496 aaKnown RBP13.7□□□□□ -0.22
CLN3-204ENST00000357857 DNLZQ5SXM8 178 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 SSBP4Q9BWG4 385 aaPredicted RBP13.7□□□□□ -0.22
CLN3-204ENST00000357857 CNFNQ9BYD5 112 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 SNAI2O43623 268 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 INSP01308 110 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 S100A8P05109 93 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 OR5AL1P0C617 328 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 SSTP61278 116 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 DEFB125Q8N687 156 aa13.7□□□□□ -0.22
CLN3-204ENST00000357857 TRGC1P0CF51 173 aa13.69□□□□□ -0.22
CLN3-204ENST00000357857 MED14OSP0DP75 135 aa13.69□□□□□ -0.22
CLN3-204ENST00000357857 C20orf144Q9BQM9 153 aa13.69□□□□□ -0.22
CLN3-204ENST00000357857 RPL35AP18077 110 aaKnown RBP13.68□□□□□ -0.22
CLN3-204ENST00000357857 XCL2Q9UBD3 114 aa13.68□□□□□ -0.22
CLN3-204ENST00000357857 TIMM8BQ9Y5J9 83 aaPredicted RBP13.68□□□□□ -0.22
CLN3-204ENST00000357857 COL6A5A8TX70 2615 aa13.68□□□□□ -0.22
CLN3-204ENST00000357857 NTF3P20783 257 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 TWIST1Q15672 202 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 PRR31Q5SQ13 230 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 GATD1Q8NB37 220 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BKO60814 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 APCSP02743 223 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BJP06899 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 RNASE3P12724 160 aaKnown RBP13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BOP23527 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BBP33778 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BDP58876 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BCP62807 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 CACNG7P62955 275 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST2H2BEQ16778 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.67□□□□□ -0.22
CLN3-204ENST00000357857 OR10AG1Q8NH19 301 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BHQ93079 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BNQ99877 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 HIST1H2BMQ99879 126 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 TP53TG3Q9ULZ0 132 aa13.67□□□□□ -0.22
CLN3-204ENST00000357857 TRRAPQ9Y4A5 3859 aa13.66□□□□□ -0.22
CLN3-204ENST00000357857 SLAQ13239 276 aa13.66□□□□□ -0.22
CLN3-204ENST00000357857 MORN3Q6PF18 240 aaPredicted RBP13.66□□□□□ -0.22
CLN3-204ENST00000357857 Q8N1Y9 231 aa13.66□□□□□ -0.22
CLN3-204ENST00000357857 IGHV3-16A0A0C4DH30 117 aa13.65□□□□□ -0.22
CLN3-204ENST00000357857 SCRT2Q9NQ03 307 aa13.65□□□□□ -0.22
CLN3-204ENST00000357857 TRGV11A0A075B6L2 103 aa13.64□□□□□ -0.23
CLN3-204ENST00000357857 IGHV4-4A0A075B6R2 117 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms