RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 NKAPP1Q8N9T2 125 aa11.7□□□□□ -0.54
CHD4-201ENST00000357008 SHISA9B4DS77 424 aa11.69□□□□□ -0.54
CHD4-201ENST00000357008 LINC01545Q5VT33 79 aa11.69□□□□□ -0.54
CHD4-201ENST00000357008 CFHR4Q92496 578 aa11.69□□□□□ -0.54
CHD4-201ENST00000357008 CRYBA4P53673 196 aa11.69□□□□□ -0.54
CHD4-201ENST00000357008 FNDC1Q4ZHG4 1894 aaPredicted RBP11.69□□□□□ -0.54
CHD4-201ENST00000357008 PLA2G2EQ9NZK7 142 aa11.69□□□□□ -0.54
CHD4-201ENST00000357008 IGLL5B9A064 214 aa11.69□□□□□ -0.54
CHD4-201ENST00000357008 PRR30Q53SZ7 412 aaPredicted RBP11.69□□□□□ -0.54
CHD4-201ENST00000357008 RLFQ13129 1914 aa11.68□□□□□ -0.54
CHD4-201ENST00000357008 C11orf53Q8IXP5 236 aa11.68□□□□□ -0.54
CHD4-201ENST00000357008 ABCA4P78363 2273 aa11.68□□□□□ -0.54
CHD4-201ENST00000357008 H3BUA1 57 aa11.68□□□□□ -0.54
CHD4-201ENST00000357008 RNF223E7ERA6 249 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 FOXE3Q13461 319 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 NBASA2RRP1 2371 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 TSC2P49815 1807 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 TRAV25A0A0B4J276 109 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 TEX48A0A1B0GUV7 120 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 GNRH2O43555 120 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 TINCRA0A1B0GVN0 87 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 ACYP1P07311 99 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 RNASE13Q5GAN3 156 aaKnown RBP11.67□□□□□ -0.54
CHD4-201ENST00000357008 SHANK1Q9Y566 2161 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 GPR179Q6PRD1 2367 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 K7ENP7 123 aa11.67□□□□□ -0.54
CHD4-201ENST00000357008 GP9P14770 177 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 TDRG1Q3Y452 100 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 Q6ZSR3 168 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 ANKRD39Q53RE8 183 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 TRAV12-1A0A0B4J245 112 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 FAM215AQ9Y5M1 114 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 BAALC-AS2P0C853 105 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 FOXI2Q6ZQN5 318 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 ELANEP08246 267 aa11.66□□□□□ -0.54
CHD4-201ENST00000357008 GATA1P15976 413 aaPredicted RBP11.66□□□□□ -0.54
CHD4-201ENST00000357008 THSD7BQ9C0I4 1608 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 SH2D6Q7Z4S9 175 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 LYPD6Q86Y78 171 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 PRSS47A8MTI9 375 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 IGF2BP2-AS1Q96M15 143 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 DEFB121Q5J5C9 76 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 UNQ6494/PRO21346Q6UXR6 183 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 LINC00173Q6ZV60 143 aa11.65□□□□□ -0.54
CHD4-201ENST00000357008 COL4A6Q14031 1691 aa11.65□□□□□ -0.55
CHD4-201ENST00000357008 B5MCH6 92 aa11.65□□□□□ -0.55
CHD4-201ENST00000357008 CITED2Q99967 270 aaPredicted RBP11.64□□□□□ -0.55
CHD4-201ENST00000357008 Q9H8V8 135 aa11.64□□□□□ -0.55
CHD4-201ENST00000357008 FGF23Q9GZV9 251 aaPredicted RBP11.64□□□□□ -0.55
CHD4-201ENST00000357008 HELZP42694 1942 aaKnown RBP11.64□□□□□ -0.55
CHD4-201ENST00000357008 F6UB75 175 aa11.64□□□□□ -0.55
CHD4-201ENST00000357008 J3QLI3 93 aa11.64□□□□□ -0.55
CHD4-201ENST00000357008 HOXD3P31249 432 aaPredicted RBP11.64□□□□□ -0.55
CHD4-201ENST00000357008 HERV-K104P63124 156 aa11.64□□□□□ -0.55
CHD4-201ENST00000357008 PLXNA2O75051 1894 aa11.63□□□□□ -0.55
CHD4-201ENST00000357008 C22orf46C9J442 243 aa11.63□□□□□ -0.55
CHD4-201ENST00000357008 CTSZQ9UBR2 303 aa11.63□□□□□ -0.55
CHD4-201ENST00000357008 KRTAP27-1Q3LI81 207 aa11.63□□□□□ -0.55
CHD4-201ENST00000357008 PATE2Q6UY27 113 aa11.62□□□□□ -0.55
CHD4-201ENST00000357008 SLC25A29Q8N8R3 303 aa11.62□□□□□ -0.55
CHD4-201ENST00000357008 ORMDL1Q9P0S3 153 aa11.62□□□□□ -0.55
CHD4-201ENST00000357008 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.62□□□□□ -0.559e-7■■■■□ 21.3
CHD4-201ENST00000357008 HIGD1BQ9P298 99 aa11.62□□□□□ -0.55
CHD4-201ENST00000357008 I3L2K1 104 aa11.62□□□□□ -0.55
CHD4-201ENST00000357008 ANGP03950 147 aaKnown RBP11.62□□□□□ -0.55
CHD4-201ENST00000357008 LHBP01229 141 aa11.61□□□□□ -0.55
CHD4-201ENST00000357008 CRYGCP07315 174 aa11.61□□□□□ -0.55
CHD4-201ENST00000357008 MALRD1Q5VYJ5 2156 aa11.61□□□□□ -0.55
CHD4-201ENST00000357008 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.61□□□□□ -0.55
CHD4-201ENST00000357008 IGKV2-29A2NJV5 120 aaPredicted RBP11.61□□□□□ -0.55
CHD4-201ENST00000357008 IGKV1-17P01599 117 aa11.61□□□□□ -0.55
CHD4-201ENST00000357008 APOC4P55056 127 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 RNF138Q8WVD3 245 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 CR1LQ2VPA4 569 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 MRAPQ8TCY5 172 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 RPL39LQ96EH5 51 aaKnown RBP11.6□□□□□ -0.55
CHD4-201ENST00000357008 TMEM258P61165 79 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 K7EIM0 57 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 TEN1Q86WV5 123 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 MAPK1IP1LQ8NDC0 245 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 RNASE8Q8TDE3 154 aaKnown RBP11.6□□□□□ -0.55
CHD4-201ENST00000357008 U3KQE9 123 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 NLRC5Q86WI3 1866 aa11.6□□□□□ -0.55
CHD4-201ENST00000357008 HOXB4P17483 251 aaPredicted RBP11.59□□□□□ -0.55
CHD4-201ENST00000357008 RBM3P98179 157 aaKnown RBP11.59□□□□□ -0.55
CHD4-201ENST00000357008 SP5Q6BEB4 398 aaPredicted RBP11.59□□□□□ -0.55
CHD4-201ENST00000357008 FAM167A-AS1Q96KT0 104 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 MSRB1Q9NZV6 116 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 SS18L2Q9UHA2 77 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 RS1O15537 224 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 PLXND1Q9Y4D7 1925 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 A4D1N5 150 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 TAX1BP3O14907 124 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 FXYD2P54710 66 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 ZFP2Q6ZN57 461 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 GTSF1Q8WW33 167 aa11.59□□□□□ -0.55
CHD4-201ENST00000357008 NPBQ8NG41 125 aa11.58□□□□□ -0.55
CHD4-201ENST00000357008 MUSTN1Q8IVN3 82 aa11.58□□□□□ -0.56
CHD4-201ENST00000357008 EML6Q6ZMW3 1958 aa11.58□□□□□ -0.56
CHD4-201ENST00000357008 IGLV11-55A0A075B6I3 123 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms