RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ORM1P02763 201 aa13.76□□□□□ -0.21
USP39-201ENST00000323701 ID1P41134 155 aa13.76□□□□□ -0.21
USP39-201ENST00000323701 PEMTQ9UBM1 199 aa13.76□□□□□ -0.21
USP39-201ENST00000323701 ATRQ13535 2644 aa13.76□□□□□ -0.21
USP39-201ENST00000323701 F2Z2F3 143 aa13.76□□□□□ -0.21
USP39-201ENST00000323701 M0QZ24 198 aa13.75□□□□□ -0.21
USP39-201ENST00000323701 WDR73Q6P4I2 378 aa13.75□□□□□ -0.21
USP39-201ENST00000323701 LYZL1Q6UWQ5 148 aa13.75□□□□□ -0.21
USP39-201ENST00000323701 SNHG12Q9BXW3 62 aa13.75□□□□□ -0.21
USP39-201ENST00000323701 DEFB114Q30KQ6 69 aa13.74□□□□□ -0.21
USP39-201ENST00000323701 NSUN5P1Q3KNT7 163 aa13.74□□□□□ -0.21
USP39-201ENST00000323701 ATP5L2Q7Z4Y8 100 aa13.74□□□□□ -0.21
USP39-201ENST00000323701 M0R143 59 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 HBBP68871 147 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 LINC01559Q495D7 138 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 CD300EQ496F6 205 aaPredicted RBP13.73□□□□□ -0.21
USP39-201ENST00000323701 HLA-DQA1P01909 254 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 MT-ND6P03923 174 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 CRISP2P16562 243 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 SNRPD3P62318 126 aaKnown RBP13.73□□□□□ -0.21
USP39-201ENST00000323701 RASL11AQ6T310 242 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 LENEPQ9Y5L5 61 aa13.73□□□□□ -0.21
USP39-201ENST00000323701 SERF1AO75920 110 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 IGKV3-20P01619 116 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 IGLC6P0CF74 106 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 A0A0J9YX75 114 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 A0A1B0GUT8 65 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 APCSP02743 223 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 RAB4AP20338 218 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 SAMD13Q5VXD3 122 aa13.72□□□□□ -0.21
USP39-201ENST00000323701 RNASE4P34096 147 aaKnown RBP13.71□□□□□ -0.21
USP39-201ENST00000323701 KIR2DL5BA0A0G2JN68 375 aa13.71□□□□□ -0.22
USP39-201ENST00000323701 KIR2DL5BA0A0G2JPC4 375 aa13.71□□□□□ -0.22
USP39-201ENST00000323701 GPX1P07203 203 aa13.71□□□□□ -0.22
USP39-201ENST00000323701 KIR2DL5AQ8N109 375 aa13.71□□□□□ -0.22
USP39-201ENST00000323701 DYNLRB2Q8TF09 96 aa13.71□□□□□ -0.22
USP39-201ENST00000323701 TRRAPQ9Y4A5 3859 aa13.7□□□□□ -0.22
USP39-201ENST00000323701 SCGB1D1O95968 90 aa13.7□□□□□ -0.22
USP39-201ENST00000323701 ESDP10768 282 aa13.7□□□□□ -0.22
USP39-201ENST00000323701 COX19Q49B96 90 aa13.7□□□□□ -0.22
USP39-201ENST00000323701 Q6ZWC4 215 aa13.7□□□□□ -0.22
USP39-201ENST00000323701 G0S2P27469 103 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 SRIP30626 198 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 PAFAH1B2P68402 229 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 APRG1Q8IVJ8 170 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 FER1L6-AS1Q8NA97 138 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 MSRB1Q9NZV6 116 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 Q0VG73 95 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 MRPL52Q86TS9 123 aaKnown RBP13.69□□□□□ -0.22
USP39-201ENST00000323701 NAGKQ9UJ70 344 aa13.69□□□□□ -0.22
USP39-201ENST00000323701 KNCNA6PVL3 124 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 KLLNB2CW77 178 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 CTRLP40313 264 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 DEFB131AP59861 70 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 ZNF256Q9Y2P7 627 aaPredicted RBP13.68□□□□□ -0.22
USP39-201ENST00000323701 M0R2Z0 102 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 SPRY2O43597 315 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 Q6AWC8 147 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 BAGE3Q86Y29 109 aa13.68□□□□□ -0.22
USP39-201ENST00000323701 TRAV12-2A0A075B6T6 113 aa13.67□□□□□ -0.22
USP39-201ENST00000323701 RPS20P60866 119 aaKnown RBP13.67□□□□□ -0.22
USP39-201ENST00000323701 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.66□□□□□ -0.22
USP39-201ENST00000323701 ZNF25P17030 456 aaPredicted RBP13.66□□□□□ -0.22
USP39-201ENST00000323701 NTF3P20783 257 aa13.66□□□□□ -0.22
USP39-201ENST00000323701 RIGQ13278 110 aa13.66□□□□□ -0.22
USP39-201ENST00000323701 RCHY1Q96PM5 261 aa13.66□□□□□ -0.22
USP39-201ENST00000323701 FBN1P35555 2871 aaKnown RBP13.65□□□□□ -0.22
USP39-201ENST00000323701 TRBV7-9A0A0J9YWB2 115 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 ANXA2RQ3ZCQ2 193 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 EBLN2Q6P2I7 272 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 AMTNQ6UX39 209 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 NOTCH3Q9UM47 2321 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 TRAV21A0A0B4J279 112 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 SPINK13Q1W4C9 94 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 FOXI2Q6ZQN5 318 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 ALKBH7Q9BT30 221 aaPredicted RBP13.65□□□□□ -0.22
USP39-201ENST00000323701 MAP6D1Q9H9H5 199 aa13.65□□□□□ -0.22
USP39-201ENST00000323701 TRAV12-3A0A0B4J271 114 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 GAGE1Q13065 139 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 OR10AG1Q8NH19 301 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 LOC102724200A0A096LPH7 203 aaPredicted RBP13.64□□□□□ -0.23
USP39-201ENST00000323701 RBMY1BA6NDE4 496 aaKnown RBP13.64□□□□□ -0.23
USP39-201ENST00000323701 RBMY1EA6NEQ0 496 aaKnown RBP13.64□□□□□ -0.23
USP39-201ENST00000323701 GNRH2O43555 120 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 RBMY1DP0C7P1 496 aaKnown RBP13.64□□□□□ -0.23
USP39-201ENST00000323701 TWIST1Q15672 202 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 TDRG1Q3Y452 100 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 SPATA3Q8NHX4 192 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 C18orf32Q8TCD1 76 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 CNFNQ9BYD5 112 aa13.64□□□□□ -0.23
USP39-201ENST00000323701 TRAV2A0A0B4J234 112 aa13.63□□□□□ -0.23
USP39-201ENST00000323701 DLEU1O43261 78 aa13.63□□□□□ -0.23
USP39-201ENST00000323701 ZNF324O75467 553 aaPredicted RBP13.63□□□□□ -0.23
USP39-201ENST00000323701 FXYD7P58549 80 aa13.63□□□□□ -0.23
USP39-201ENST00000323701 NDUFA11Q86Y39 141 aa13.63□□□□□ -0.23
USP39-201ENST00000323701 GATD1Q8NB37 220 aa13.63□□□□□ -0.23
USP39-201ENST00000323701 SIGLEC8Q9NYZ4 499 aa13.63□□□□□ -0.23
USP39-201ENST00000323701 H3BVH4 76 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 SAP30O75446 220 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 ODF3L2Q3SX64 289 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms