RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 TRAV41A0A0B4J266 112 aa16.77■□□□□ 0.28
SHMT1-201ENST00000316694 SMIM13P0DJ93 91 aa16.77■□□□□ 0.28
SHMT1-201ENST00000316694 C20orf173Q96LM9 149 aa16.77■□□□□ 0.28
SHMT1-201ENST00000316694 SPRY2O43597 315 aa16.77■□□□□ 0.27
SHMT1-201ENST00000316694 HIGD1BQ9P298 99 aa16.77■□□□□ 0.27
SHMT1-201ENST00000316694 K7ERJ3 54 aa16.76■□□□□ 0.27
SHMT1-201ENST00000316694 MEGF9Q9H1U4 602 aa16.76■□□□□ 0.27
SHMT1-201ENST00000316694 ARL3P36405 182 aa16.75■□□□□ 0.27
SHMT1-201ENST00000316694 FABP2P12104 132 aa16.75■□□□□ 0.27
SHMT1-201ENST00000316694 SRSF1Q07955 248 aaKnown RBP eCLIP16.75■□□□□ 0.27
SHMT1-201ENST00000316694 GLMPQ8WWB7 406 aa16.75■□□□□ 0.27
SHMT1-201ENST00000316694 IGHV4-4A0A075B6R2 117 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 M0R381 172 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 DEFB1P60022 68 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 SAMD5Q5TGI4 173 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 UNQ9165/PRO28630Q6UXU0 137 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 PRSS47A8MTI9 375 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 TRBV12-3P01733 135 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 COTL1Q14019 142 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 C9orf139Q6ZV77 190 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 MOB4Q9Y3A3 225 aa16.74■□□□□ 0.27
SHMT1-201ENST00000316694 KLK15Q9H2R5 256 aa16.73■□□□□ 0.27
SHMT1-201ENST00000316694 K7EMI3 77 aa16.73■□□□□ 0.27
SHMT1-201ENST00000316694 C19orf84I3L1E1 186 aa16.72■□□□□ 0.27
SHMT1-201ENST00000316694 BRD3OSQ6XYD6 125 aa16.72■□□□□ 0.27
SHMT1-201ENST00000316694 ITLN2Q8WWU7 325 aaPredicted RBP16.72■□□□□ 0.27
SHMT1-201ENST00000316694 MAP1AP78559 2803 aaPredicted RBP16.72■□□□□ 0.27
SHMT1-201ENST00000316694 A0A087WX48 190 aa16.72■□□□□ 0.27
SHMT1-201ENST00000316694 FAM223BA6NKX1 122 aa16.72■□□□□ 0.27
SHMT1-201ENST00000316694 FAM223AQ8IWN6 122 aa16.72■□□□□ 0.27
SHMT1-201ENST00000316694 MAPKAPK5-AS1Q8N8E1 139 aa16.72■□□□□ 0.27
SHMT1-201ENST00000316694 SMIM2Q9BVW6 85 aa16.72■□□□□ 0.27
SHMT1-201ENST00000316694 NHP2Q9NX24 153 aaKnown RBP16.72■□□□□ 0.27
SHMT1-201ENST00000316694 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.71■□□□□ 0.27
SHMT1-201ENST00000316694 S100A4P26447 101 aaKnown RBP16.71■□□□□ 0.27
SHMT1-201ENST00000316694 OR5A1Q8NGJ0 315 aa16.71■□□□□ 0.27
SHMT1-201ENST00000316694 MRAP2Q96G30 205 aa16.71■□□□□ 0.27
SHMT1-201ENST00000316694 RPL11P62913 178 aaKnown RBP16.71■□□□□ 0.26
SHMT1-201ENST00000316694 OR10J6PQ8NGY7 276 aa16.71■□□□□ 0.26
SHMT1-201ENST00000316694 GPHB5Q86YW7 130 aa16.7■□□□□ 0.26
SHMT1-201ENST00000316694 CEND1Q8N111 149 aa16.7■□□□□ 0.26
SHMT1-201ENST00000316694 ZFAND2AQ8N6M9 145 aa16.7■□□□□ 0.26
SHMT1-201ENST00000316694 ABCA2Q9BZC7 2435 aa16.69■□□□□ 0.26
SHMT1-201ENST00000316694 IGKV3-7A0A075B6H7 116 aa16.69■□□□□ 0.26
SHMT1-201ENST00000316694 LINC00477Q96M19 166 aa16.69■□□□□ 0.26
SHMT1-201ENST00000316694 IGHV3-11P01762 117 aa16.69■□□□□ 0.26
SHMT1-201ENST00000316694 C19orf54Q5BKX5 351 aa16.69■□□□□ 0.26
SHMT1-201ENST00000316694 C14orf178Q8N769 122 aaPredicted RBP16.69■□□□□ 0.26
SHMT1-201ENST00000316694 LENEPQ9Y5L5 61 aa16.69■□□□□ 0.26
SHMT1-201ENST00000316694 PLNP26678 52 aa16.68■□□□□ 0.26
SHMT1-201ENST00000316694 PHLDA3Q9Y5J5 127 aa16.68■□□□□ 0.26
SHMT1-201ENST00000316694 TRAV21A0A0B4J279 112 aa16.68■□□□□ 0.26
SHMT1-201ENST00000316694 RPL39LQ96EH5 51 aaKnown RBP16.68■□□□□ 0.26
SHMT1-201ENST00000316694 RIPPLY3P57055 190 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 SUMO2P61956 95 aaKnown RBP16.67■□□□□ 0.26
SHMT1-201ENST00000316694 LY6EQ16553 131 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 TM2D2Q9BX73 214 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 F6UB75 175 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 MGPP08493 103 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 HLA-DRB4P13762 266 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 RNASE4P34096 147 aaKnown RBP16.67■□□□□ 0.26
SHMT1-201ENST00000316694 ASIPP42127 132 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 RASL10AQ92737 203 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 SCGB3A1Q96QR1 104 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 HLA-DRB4X5D2U9 266 aa16.67■□□□□ 0.26
SHMT1-201ENST00000316694 AGRNO00468 2067 aa16.66■□□□□ 0.26
SHMT1-201ENST00000316694 ANXA2RQ3ZCQ2 193 aa16.66■□□□□ 0.26
SHMT1-201ENST00000316694 H7C1H1 209 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 OVOL1O14753 267 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 NEGR1Q7Z3B1 354 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 PHLDA1Q8WV24 401 aaPredicted RBP16.65■□□□□ 0.26
SHMT1-201ENST00000316694 ATP6V0BQ99437 205 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 IGHV1-69DA0A0B4J2H0 117 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 NDUFA4O00483 81 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 IGHV1-69P01742 117 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 ORMDL2Q53FV1 153 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 DPH3P1Q9H4G8 78 aa16.65■□□□□ 0.26
SHMT1-201ENST00000316694 F8VRH5 84 aa16.64■□□□□ 0.26
SHMT1-201ENST00000316694 G3V4G9 280 aa16.64■□□□□ 0.26
SHMT1-201ENST00000316694 CSTL1Q9H114 145 aa16.64■□□□□ 0.26
SHMT1-201ENST00000316694 SOCS3O14543 225 aa16.64■□□□□ 0.25
SHMT1-201ENST00000316694 GNLYP22749 145 aa16.64■□□□□ 0.25
SHMT1-201ENST00000316694 CHTOPQ9Y3Y2 248 aaKnown RBP16.64■□□□□ 0.25
SHMT1-201ENST00000316694 IGHV4-39P01824 125 aa16.63■□□□□ 0.25
SHMT1-201ENST00000316694 HIST1H4GQ99525 98 aa16.63■□□□□ 0.25
SHMT1-201ENST00000316694 GNRH2O43555 120 aa16.63■□□□□ 0.25
SHMT1-201ENST00000316694 TRAV12-1A0A0B4J245 112 aa16.62■□□□□ 0.25
SHMT1-201ENST00000316694 LCNL1Q6ZST4 164 aa16.62■□□□□ 0.25
SHMT1-201ENST00000316694 TOMM6Q96B49 74 aa16.62■□□□□ 0.25
SHMT1-201ENST00000316694 CRIP2P52943 208 aaPredicted RBP16.62■□□□□ 0.25
SHMT1-201ENST00000316694 PF4V1P10720 104 aa16.61■□□□□ 0.25
SHMT1-201ENST00000316694 C20orf78Q9BR46 151 aa16.61■□□□□ 0.25
SHMT1-201ENST00000316694 OR11H12B2RN74 326 aa16.6■□□□□ 0.25
SHMT1-201ENST00000316694 OR11H1Q8NG94 326 aa16.6■□□□□ 0.25
SHMT1-201ENST00000316694 OR11H2Q8NH07 326 aa16.6■□□□□ 0.25
SHMT1-201ENST00000316694 SPOCK3Q9BQ16 436 aa16.6■□□□□ 0.25
SHMT1-201ENST00000316694 IGHV4-38-2P0DP08 117 aa16.6■□□□□ 0.25
SHMT1-201ENST00000316694 RPL24P83731 157 aaKnown RBP16.6■□□□□ 0.25
SHMT1-201ENST00000316694 C2orf66Q6UXQ4 117 aa16.6■□□□□ 0.25
SHMT1-201ENST00000316694 NEXN-AS1Q8NBZ9 246 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms