RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SUMO4Q6EEV6 95 aa13.66□□□□□ -0.22
SYNPO-201ENST00000307662 LYPD6Q86Y78 171 aa13.66□□□□□ -0.22
SYNPO-201ENST00000307662 HIGD1BQ9P298 99 aa13.66□□□□□ -0.22
SYNPO-201ENST00000307662 TICRRQ7Z2Z1 1910 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 ZNF561-AS1K7EIQ3 104 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 POLEQ07864 2286 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 GP9P14770 177 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 FXYD2P54710 66 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 TEN1Q86WV5 123 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 LINC01619G3V211 115 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 FOXE3Q13461 319 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 LINC01356Q8N9X3 169 aa13.65□□□□□ -0.22
SYNPO-201ENST00000307662 WFDC2Q14508 124 aa13.64□□□□□ -0.23
SYNPO-201ENST00000307662 SMIM20Q8N5G0 67 aa13.64□□□□□ -0.23
SYNPO-201ENST00000307662 IGHV7-4-1A0A0J9YVY3 117 aa13.64□□□□□ -0.23
SYNPO-201ENST00000307662 LENEPQ9Y5L5 61 aa13.64□□□□□ -0.23
SYNPO-201ENST00000307662 RS1O15537 224 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 PRSS47A8MTI9 375 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 GNRH2O43555 120 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 TMEM258P61165 79 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 CR1LQ2VPA4 569 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 IGFL3Q6UXB1 125 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 TRAV25A0A0B4J276 109 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 Q6ZSR3 168 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 RBM3P98179 157 aaKnown RBP13.63□□□□□ -0.23
SYNPO-201ENST00000307662 TCTEX1D4Q5JR98 221 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 C11orf53Q8IXP5 236 aa13.63□□□□□ -0.23
SYNPO-201ENST00000307662 G3V4G9 280 aa13.62□□□□□ -0.23
SYNPO-201ENST00000307662 FGF23Q9GZV9 251 aaPredicted RBP13.62□□□□□ -0.23
SYNPO-201ENST00000307662 KAAG1Q9UBP8 84 aa13.62□□□□□ -0.23
SYNPO-201ENST00000307662 Q9H8V8 135 aa13.62□□□□□ -0.23
SYNPO-201ENST00000307662 DOCK8Q8NF50 2099 aa13.61□□□□□ -0.23
SYNPO-201ENST00000307662 MSMBP08118 114 aa13.61□□□□□ -0.23
SYNPO-201ENST00000307662 GNLYP22749 145 aa13.61□□□□□ -0.23
SYNPO-201ENST00000307662 ORMDL1Q9P0S3 153 aa13.61□□□□□ -0.23
SYNPO-201ENST00000307662 NKAPP1Q8N9T2 125 aa13.61□□□□□ -0.23
SYNPO-201ENST00000307662 GTSF1Q8WW33 167 aa13.61□□□□□ -0.23
SYNPO-201ENST00000307662 HELZP42694 1942 aaKnown RBP13.61□□□□□ -0.23
SYNPO-201ENST00000307662 GATA3P23771 443 aa13.6□□□□□ -0.23
SYNPO-201ENST00000307662 FOXI1Q12951 378 aa13.6□□□□□ -0.23
SYNPO-201ENST00000307662 PATE2Q6UY27 113 aa13.6□□□□□ -0.23
SYNPO-201ENST00000307662 TANC1Q9C0D5 1861 aa13.6□□□□□ -0.23
SYNPO-201ENST00000307662 ZNF407Q9C0G0 2248 aa13.6□□□□□ -0.23
SYNPO-201ENST00000307662 KRTAP27-1Q3LI81 207 aa13.6□□□□□ -0.23
SYNPO-201ENST00000307662 MUSTN1Q8IVN3 82 aa13.59□□□□□ -0.23
SYNPO-201ENST00000307662 UBE2DNLQ8IWF7 75 aa13.59□□□□□ -0.23
SYNPO-201ENST00000307662 ICOSQ9Y6W8 199 aa13.59□□□□□ -0.23
SYNPO-201ENST00000307662 A4D1N5 150 aa13.59□□□□□ -0.23
SYNPO-201ENST00000307662 PLA2G2CQ5R387 149 aa13.59□□□□□ -0.23
SYNPO-201ENST00000307662 RPL39LQ96EH5 51 aaKnown RBP13.59□□□□□ -0.23
SYNPO-201ENST00000307662 HERV-K104P63124 156 aa13.59□□□□□ -0.23
SYNPO-201ENST00000307662 PKDREJQ9NTG1 2253 aa13.59□□□□□ -0.23
SYNPO-201ENST00000307662 PLXND1Q9Y4D7 1925 aa13.58□□□□□ -0.23
SYNPO-201ENST00000307662 LINC01620Q4KN68 170 aa13.58□□□□□ -0.24
SYNPO-201ENST00000307662 FAM167A-AS1Q96KT0 104 aa13.58□□□□□ -0.24
SYNPO-201ENST00000307662 MSRB1Q9NZV6 116 aa13.58□□□□□ -0.24
SYNPO-201ENST00000307662 F6UB75 175 aa13.58□□□□□ -0.24
SYNPO-201ENST00000307662 K7ENP7 123 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 PSCAO43653 123 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 FRMPD3Q5JV73 1810 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 A0A0B4J2C4 111 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 CRYGCP07315 174 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 SLC25A29Q8N8R3 303 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-201ENST00000307662 IGKV2-29A2NJV5 120 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-201ENST00000307662 NOTCH4Q99466 2003 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 DIDO1Q9BTC0 2240 aaKnown RBP13.57□□□□□ -0.24
SYNPO-201ENST00000307662 TTTY13Q9BZ97 58 aa13.57□□□□□ -0.24
SYNPO-201ENST00000307662 I3L2K1 104 aa13.56□□□□□ -0.24
SYNPO-201ENST00000307662 ATOX1O00244 68 aa13.56□□□□□ -0.24
SYNPO-201ENST00000307662 DAD1P61803 113 aa13.56□□□□□ -0.24
SYNPO-201ENST00000307662 COL6A6A6NMZ7 2263 aa13.56□□□□□ -0.24
SYNPO-201ENST00000307662 F5H768 121 aa13.56□□□□□ -0.24
SYNPO-201ENST00000307662 H3BUA1 57 aa13.56□□□□□ -0.24
SYNPO-201ENST00000307662 ZFP2Q6ZN57 461 aa13.56□□□□□ -0.24
SYNPO-201ENST00000307662 FAM236AA0A1B0GUQ0 79 aa13.55□□□□□ -0.24
SYNPO-201ENST00000307662 FAM236BA0A1B0GV22 79 aa13.55□□□□□ -0.24
SYNPO-201ENST00000307662 HOXD3P31249 432 aaPredicted RBP13.55□□□□□ -0.24
SYNPO-201ENST00000307662 PRR30Q53SZ7 412 aaPredicted RBP13.55□□□□□ -0.24
SYNPO-201ENST00000307662 CACNA1GO43497 2377 aa13.55□□□□□ -0.24
SYNPO-201ENST00000307662 C22orf46C9J442 243 aa13.55□□□□□ -0.24
SYNPO-201ENST00000307662 SPRY2O43597 315 aa13.55□□□□□ -0.24
SYNPO-201ENST00000307662 FRMD6-AS1P0C7T7 363 aa13.55□□□□□ -0.24
SYNPO-201ENST00000307662 ATP6V0E2Q8NHE4 81 aa13.55□□□□□ -0.24
SYNPO-201ENST00000307662 C11orf1Q9H5F2 150 aa13.54□□□□□ -0.24
SYNPO-201ENST00000307662 RNF138Q8WVD3 245 aa13.54□□□□□ -0.24
SYNPO-201ENST00000307662 RNF114Q9Y508 228 aa13.54□□□□□ -0.24
SYNPO-201ENST00000307662 ABCA1O95477 2261 aa13.53□□□□□ -0.24
SYNPO-201ENST00000307662 J3KT08 172 aa13.53□□□□□ -0.24
SYNPO-201ENST00000307662 IGKV1-17P01599 117 aa13.53□□□□□ -0.24
SYNPO-201ENST00000307662 CTSZQ9UBR2 303 aa13.53□□□□□ -0.24
SYNPO-201ENST00000307662 KMT2EQ8IZD2 1858 aa13.53□□□□□ -0.24
SYNPO-201ENST00000307662 K7EIM0 57 aa13.53□□□□□ -0.24
SYNPO-201ENST00000307662 LHBP01229 141 aa13.53□□□□□ -0.24
SYNPO-201ENST00000307662 A0A0J9YXV3 536 aa13.52□□□□□ -0.24
SYNPO-201ENST00000307662 E9PLD3 99 aa13.52□□□□□ -0.24
SYNPO-201ENST00000307662 NBL1P41271 181 aa13.52□□□□□ -0.24
SYNPO-201ENST00000307662 A0A1B0GX51 115 aa13.52□□□□□ -0.24
SYNPO-201ENST00000307662 H0YGX0 51 aa13.52□□□□□ -0.25
SYNPO-201ENST00000307662 WNK2Q9Y3S1 2297 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms