RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 TMEM219Q86XT9 240 aa11.31□□□□□ -0.6
CCNF-201ENST00000293968 LY6G5BQ8NDX9 201 aa11.31□□□□□ -0.6
CCNF-201ENST00000293968 TM2D2Q9BX73 214 aa11.31□□□□□ -0.6
CCNF-201ENST00000293968 M0R1W7 72 aa11.3□□□□□ -0.6
CCNF-201ENST00000293968 ZNF815PA8K554 130 aa11.3□□□□□ -0.6
CCNF-201ENST00000293968 RAB9AP51151 201 aa11.3□□□□□ -0.6
CCNF-201ENST00000293968 ZNF48Q96MX3 618 aaPredicted RBP11.3□□□□□ -0.6
CCNF-201ENST00000293968 E9PLD3 99 aa11.3□□□□□ -0.6
CCNF-201ENST00000293968 HOXA3O43365 443 aaPredicted RBP11.3□□□□□ -0.6
CCNF-201ENST00000293968 PSMB2P49721 201 aa11.3□□□□□ -0.6
CCNF-201ENST00000293968 WFDC12Q8WWY7 111 aa11.3□□□□□ -0.6
CCNF-201ENST00000293968 EEF1AKMT3Q96AZ1 226 aa11.3□□□□□ -0.6
CCNF-201ENST00000293968 F8W1H4 67 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 Q5PR19 223 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 ZNF575Q86XF7 245 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 SMIM2Q9BVW6 85 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 ATP5G2Q06055 141 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 NRACQ8N912 160 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 SPANXB1Q9NS25 103 aaPredicted RBP11.29□□□□□ -0.6
CCNF-201ENST00000293968 MYMXA0A1B0GTQ4 84 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 F5H697 171 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 F8VRH5 84 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 RNASE4P34096 147 aaKnown RBP11.29□□□□□ -0.6
CCNF-201ENST00000293968 INSL3P51460 131 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 CLEC2AQ6UVW9 174 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 Q8N9W7 124 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 PHLDA1Q8WV24 401 aaPredicted RBP11.29□□□□□ -0.6
CCNF-201ENST00000293968 CNFNQ9BYD5 112 aa11.29□□□□□ -0.6
CCNF-201ENST00000293968 IGF2-ASQ6U949 168 aa11.28□□□□□ -0.6
CCNF-201ENST00000293968 ODF3BA8MYP8 253 aa11.28□□□□□ -0.6
CCNF-201ENST00000293968 ZFP36P26651 326 aaKnown RBP11.28□□□□□ -0.6
CCNF-201ENST00000293968 RRN3P1Q2M238 152 aa11.28□□□□□ -0.6
CCNF-201ENST00000293968 COX8CQ7Z4L0 72 aa11.28□□□□□ -0.6
CCNF-201ENST00000293968 SPAG8Q99932 426 aaPredicted RBP11.28□□□□□ -0.6
CCNF-201ENST00000293968 SUMO2P61956 95 aaKnown RBP11.28□□□□□ -0.6
CCNF-201ENST00000293968 FAM110DQ8TAY7 271 aaPredicted RBP11.28□□□□□ -0.6
CCNF-201ENST00000293968 MSRB2Q9Y3D2 182 aa11.28□□□□□ -0.6
CCNF-201ENST00000293968 PTPRQQ9UMZ3 2332 aa11.27□□□□□ -0.6
CCNF-201ENST00000293968 CIDEAO60543 219 aa11.27□□□□□ -0.6
CCNF-201ENST00000293968 PRADC1Q9BSG0 188 aa11.27□□□□□ -0.6
CCNF-201ENST00000293968 ZFAND3Q9H8U3 227 aa11.27□□□□□ -0.6
CCNF-201ENST00000293968 IGLV2-18A0A075B6J9 118 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 IGHV7-4-1A0A0J9YVY3 117 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 HLA-DRB4P13762 266 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 SLC25A16P16260 332 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 C2orf66Q6UXQ4 117 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 OR10J6PQ8NGY7 276 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 HLA-DRB4X5D2U9 266 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 IGHV3-11P01762 117 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 KLHL30-AS1Q8NEE0 82 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 CCDC140Q96MF4 163 aa11.27□□□□□ -0.61
CCNF-201ENST00000293968 TRAV8-2A0A0B4J237 113 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 LINC01549A6NIU2 74 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 ORMDL2Q53FV1 153 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 PRR9Q5T870 116 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 SRD5A1P18405 259 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 SAA4P35542 130 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 ASIPP42127 132 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 PIFOQ8TCI5 191 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 RELNP78509 3460 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 F6UB75 175 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 SCGB1C2P0DMR2 95 aa11.26□□□□□ -0.61
CCNF-201ENST00000293968 NDUFS8O00217 210 aa11.25□□□□□ -0.61
CCNF-201ENST00000293968 SRSF2Q01130 221 aaKnown RBP11.25□□□□□ -0.61
CCNF-201ENST00000293968 UBTD1Q9HAC8 227 aa11.25□□□□□ -0.61
CCNF-201ENST00000293968 RBAKDNA6NC62 111 aa11.25□□□□□ -0.61
CCNF-201ENST00000293968 CLPSL1A2RUU4 121 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 PRSS29PA6NIE9 313 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 CDSNQ15517 529 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 IGF2RP11717 2491 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 SVEP1Q4LDE5 3571 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 H7C2G1 150 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 GNRH2O43555 120 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 TAL2Q16559 108 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 ANXA2RQ3ZCQ2 193 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 TMEM170BQ5T4T1 132 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 MINOS1Q5TGZ0 78 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 MINOS1-NBL1R4GNA1 71 aa11.24□□□□□ -0.61
CCNF-201ENST00000293968 TMEM238LA0A1B0GVL6 79 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 A6NJY4 79 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 LGALS1P09382 135 aaKnown RBP11.23□□□□□ -0.61
CCNF-201ENST00000293968 MRAP2Q96G30 205 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 A0A1B0GV72 72 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 FAM74A4Q5TZK3 123 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 C20orf78Q9BR46 151 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 DPH3P1Q9H4G8 78 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 Q8N6K4 173 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 PLEKHB2Q96CS7 222 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 ZNF292O60281 2723 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 MUC6Q6W4X9 2439 aa11.23□□□□□ -0.61
CCNF-201ENST00000293968 RASL10AQ92737 203 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 C20orf173Q96LM9 149 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 TRAV21A0A0B4J279 112 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 LY6EQ16553 131 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 PTH2Q96A98 100 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 SPOCK3Q9BQ16 436 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 CREBBPQ92793 2442 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 SYT8Q8NBV8 401 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 BAALCQ8WXS3 180 aa11.22□□□□□ -0.61
CCNF-201ENST00000293968 DCHS2Q6V1P9 2916 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms