RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 A0A0G2JLM5 398 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 A1L4Q6 167 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 TMEM8BA6NDV4 472 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 RNASE4P34096 147 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 LINC00477Q96M19 166 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 DKK2Q9UBU2 259 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 CFHR3Q02985 330 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 GAGE1Q13065 139 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 LGALS9BQ3B8N2 356 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 LGALS9CQ6DKI2 356 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 SMIM15Q7Z3B0 74 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 OR2K2Q8NGT1 345 aa13.89□□□□□ -0.19
SHKBP1-201ENST00000291842 M0R381 172 aa13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 OVOL1O14753 267 aa13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 BRI3O95415 125 aa13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 ERASQ7Z444 233 aa13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 WFDC12Q8WWY7 111 aa13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 DAZ1Q9NQZ3 744 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 TGFAP01135 160 aa13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 COX8AP10176 69 aa13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 NXT2Q9NPJ8 142 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-201ENST00000291842 PEF1Q9UBV8 284 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-201ENST00000291842 BVES-AS1Q5T3Y7 98 aa13.87□□□□□ -0.19
SHKBP1-201ENST00000291842 LINC01356Q8N9X3 169 aa13.87□□□□□ -0.19
SHKBP1-201ENST00000291842 TMEM158Q8WZ71 300 aa13.87□□□□□ -0.19
SHKBP1-201ENST00000291842 LENEPQ9Y5L5 61 aa13.87□□□□□ -0.19
SHKBP1-201ENST00000291842 S100A4P26447 101 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 FCER1GP30273 86 aa13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 ANXA2RQ3ZCQ2 193 aa13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 NRACQ8N912 160 aa13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 C2orf91Q6ZV80 131 aa13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 BBC3Q96PG8 261 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 SMPXQ9UHP9 88 aa13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 COX11Q9Y6N1 276 aa13.86□□□□□ -0.19
SHKBP1-201ENST00000291842 IGLV2-18A0A075B6J9 118 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 TRAV21A0A0B4J279 112 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 GNRH2O43555 120 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 DSCR9P59020 149 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 MXRA5Q9NR99 2828 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 LINC01546A6NGU7 62 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 SLC25A16P16260 332 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 GATA3P23771 443 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 Q8N8P6 123 aa13.85□□□□□ -0.19
SHKBP1-201ENST00000291842 IGHV4-4A0A075B6R2 117 aa13.84□□□□□ -0.19
SHKBP1-201ENST00000291842 PSMB8P28062 276 aa13.84□□□□□ -0.19
SHKBP1-201ENST00000291842 PRSS1P07477 247 aa13.83□□□□□ -0.19
SHKBP1-201ENST00000291842 PTPN13Q12923 2485 aa13.83□□□□□ -0.2
SHKBP1-201ENST00000291842 ABCA12Q86UK0 2595 aa13.83□□□□□ -0.2
SHKBP1-201ENST00000291842 FGF6P10767 208 aa13.83□□□□□ -0.2
SHKBP1-201ENST00000291842 ORAOV1Q8WV07 137 aa13.83□□□□□ -0.2
SHKBP1-201ENST00000291842 A0A096LNT2 108 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 RNF223E7ERA6 249 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 C14orf178Q8N769 122 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 FAM19A4Q96LR4 140 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 PHLDA3Q9Y5J5 127 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 CD5LO43866 347 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 ASIPP42127 132 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 NMUP48645 174 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 C12orf54Q6X4T0 127 aa13.82□□□□□ -0.2
SHKBP1-201ENST00000291842 SMIM17P0DL12 118 aa13.81□□□□□ -0.2
SHKBP1-201ENST00000291842 COX6B1P14854 86 aa13.81□□□□□ -0.2
SHKBP1-201ENST00000291842 PCP2Q8IVA1 136 aa13.81□□□□□ -0.2
SHKBP1-201ENST00000291842 FOXC2Q99958 501 aa13.81□□□□□ -0.2
SHKBP1-201ENST00000291842 CCL25O15444 150 aa13.8□□□□□ -0.2
SHKBP1-201ENST00000291842 KRTAP10-9P60411 292 aa13.8□□□□□ -0.2
SHKBP1-201ENST00000291842 SRSF1Q07955 248 aaKnown RBP eCLIP13.8□□□□□ -0.2
SHKBP1-201ENST00000291842 ODF1Q14990 250 aa13.8□□□□□ -0.2
SHKBP1-201ENST00000291842 LAGE3Q14657 143 aa13.8□□□□□ -0.2
SHKBP1-201ENST00000291842 DCANP1Q8TF63 244 aa13.8□□□□□ -0.2
SHKBP1-201ENST00000291842 CBY3A6NI87 242 aa13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 TAX1BP3O14907 124 aa13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 MGPP08493 103 aa13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 PTTG1IPP53801 180 aa13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 OR1N2Q8NGR9 330 aa13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 RPL39LQ96EH5 51 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 DPF1Q92782 380 aa13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 DUX5Q96PT3 197 aa13.79□□□□□ -0.2
SHKBP1-201ENST00000291842 C7orf71A4D174 169 aa13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 K7EMT4 169 aa13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 IGKV3-20P01619 116 aa13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 ZNF688P0C7X2 276 aa13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 RNASE3P12724 160 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 BOD1L2Q8IYS8 172 aa13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 UBR5O95071 2799 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 TEX15Q9BXT5 2789 aa13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 DEFB125Q8N687 156 aa13.78□□□□□ -0.2
SHKBP1-201ENST00000291842 RASL10AQ92737 203 aa13.77□□□□□ -0.21
SHKBP1-201ENST00000291842 MRAP2Q96G30 205 aa13.77□□□□□ -0.21
SHKBP1-201ENST00000291842 TTTY13Q9BZ97 58 aa13.77□□□□□ -0.21
SHKBP1-201ENST00000291842 SORL1Q92673 2214 aa13.77□□□□□ -0.21
SHKBP1-201ENST00000291842 MUC4Q99102 2169 aa13.77□□□□□ -0.21
SHKBP1-201ENST00000291842 IGKV2D-26A0A0A0MRZ7 120 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 ID1P41134 155 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 SYNJ2BPP57105 145 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 PSMG4Q5JS54 123 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 BEX4Q9NWD9 120 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 HHLA3Q9XRX5 114 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 NAV2Q8IVL1 2488 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 TRAV12-3A0A0B4J271 114 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 PRSS47A8MTI9 375 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms