RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 IGHV7-4-1A0A0J9YVY3 117 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 SRSF2Q01130 221 aaKnown RBP8.48□□□□□ -1.05
CD44-201ENST00000263398 K7EP34 96 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 EGR2P11161 476 aaPredicted RBP8.47□□□□□ -1.05
CD44-201ENST00000263398 DKK4Q9UBT3 224 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 GAGE12JA6NER3 117 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 F8W1H4 67 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 WT1P19544 449 aaPredicted RBP8.47□□□□□ -1.05
CD44-201ENST00000263398 GAGE4Q13068 117 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 GAGE5Q13069 117 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 A0A0C4DFX4 3053 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 TRAV12-2A0A075B6T6 113 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 IGKV1-17P01599 117 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 CDPF1Q6NVV7 123 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 DYNAPQ8N1N2 210 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 MRPL53Q96EL3 112 aaKnown RBP8.47□□□□□ -1.05
CD44-201ENST00000263398 H3BUA1 57 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 HIST1H4AP62805 103 aaKnown RBP8.47□□□□□ -1.05
CD44-201ENST00000263398 NDUFA12Q9UI09 145 aa8.47□□□□□ -1.05
CD44-201ENST00000263398 HLA-DMBP28068 263 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 SP5Q6BEB4 398 aaPredicted RBP8.46□□□□□ -1.05
CD44-201ENST00000263398 PPDPFLQ8WWR9 84 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 DKK2Q9UBU2 259 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 TRBV25-1A0A075B6N4 114 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 IGHV3-16A0A0C4DH30 117 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 A0A1W2PPM0 123 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 J3QLI3 93 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 ELANEP08246 267 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 ZNF493Q6ZR52 646 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 PRO1854Q9UHT4 67 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 PRUNE2Q8WUY3 3088 aa8.46□□□□□ -1.05
CD44-201ENST00000263398 PTPN13Q12923 2485 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 RBAKDNA6NC62 111 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 K7EMI3 77 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 GP9P14770 177 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 ATP6V0BQ99437 205 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 SPRNQ5BIV9 151 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 PATE2Q6UY27 113 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 MAPK1IP1LQ8NDC0 245 aa8.46□□□□□ -1.06
CD44-201ENST00000263398 INAFM2P0DMQ5 153 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 MAJINQ3KP22 176 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 CEND1Q8N111 149 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 ZNRF2Q8NHG8 242 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 KLF12Q9Y4X4 402 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 J3QQQ9 107 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 AZU1P20160 251 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 SPAG8Q99932 426 aaPredicted RBP8.45□□□□□ -1.06
CD44-201ENST00000263398 K7EIM0 57 aa8.45□□□□□ -1.06
CD44-201ENST00000263398 COL4A4P53420 1690 aaPredicted RBP8.45□□□□□ -1.06
CD44-201ENST00000263398 H3BMM0 161 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 I3L2K1 104 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 FGF6P10767 208 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 CR1LQ2VPA4 569 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 UBE2WQ96B02 151 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 TMEM243Q9BU79 118 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 PRRC2CQ9Y520 2896 aaKnown RBP8.44□□□□□ -1.06
CD44-201ENST00000263398 PRR14LQ5THK1 2151 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 TCF15Q12870 199 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 MORN5Q5VZ52 161 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 GAGE2AQ6NT46 116 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 CENPVL3A0A0U1RRI6 287 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 NUPR1O60356 82 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 FAM167A-AS1Q96KT0 104 aa8.44□□□□□ -1.06
CD44-201ENST00000263398 TSSC4Q9Y5U2 329 aaPredicted RBP8.44□□□□□ -1.06
CD44-201ENST00000263398 PRSS29PA6NIE9 313 aa8.43□□□□□ -1.06
CD44-201ENST00000263398 OTOGLQ3ZCN5 2332 aa8.43□□□□□ -1.06
CD44-201ENST00000263398 VWC2LB2RUY7 222 aa8.43□□□□□ -1.06
CD44-201ENST00000263398 FOXE3Q13461 319 aa8.43□□□□□ -1.06
CD44-201ENST00000263398 PRSS33Q8NF86 280 aa8.43□□□□□ -1.06
CD44-201ENST00000263398 HOXB4P17483 251 aaPredicted RBP8.43□□□□□ -1.06
CD44-201ENST00000263398 CFHR4Q92496 578 aa8.43□□□□□ -1.06
CD44-201ENST00000263398 SPANXA1Q9NS26 97 aa8.43□□□□□ -1.06
CD44-201ENST00000263398 IGLV11-55A0A075B6I3 123 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 NPBQ8NG41 125 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 CDH23Q9H251 3354 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 IGHV7-81A0A0B4J1V7 117 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 IGHV3-38A0A0C4DH36 116 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 F6UB75 175 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 INS-IGF2F8WCM5 200 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 IGF2-ASQ6U949 168 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 DEFB125Q8N687 156 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 H3BMG7 143 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 GAGE7O76087 117 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 GAGE12FP0CL80 117 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 GAGE12GP0CL81 117 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 GAGE12IP0CL82 117 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 NBL1P41271 181 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 PCNX3Q9H6A9 2034 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 NACAE9PAV3 2078 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 GRNP28799 593 aaKnown RBP8.42□□□□□ -1.06
CD44-201ENST00000263398 PFN2P35080 140 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 RHOHQ15669 191 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 C12orf74Q32Q52 190 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 IGF2BP2-AS1Q96M15 143 aa8.42□□□□□ -1.06
CD44-201ENST00000263398 GNRH2O43555 120 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 CFHR3Q02985 330 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 SPRY4Q9C004 299 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 CEP295Q9C0D2 2601 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 C2CD3Q4AC94 2353 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 IGLV2-14P01704 120 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms