RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 LGALS9BQ3B8N2 356 aa16.28■□□□□ 0.2
TRIM28-201ENST00000253024 ZC2HC1BQ5TFG8 222 aa16.28■□□□□ 0.2
TRIM28-201ENST00000253024 LGALS9CQ6DKI2 356 aa16.28■□□□□ 0.2
TRIM28-201ENST00000253024 C14orf178Q8N769 122 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-201ENST00000253024 H3BUX3 64 aa16.27■□□□□ 0.2
TRIM28-201ENST00000253024 FCER1GP30273 86 aa16.27■□□□□ 0.2
TRIM28-201ENST00000253024 RNASE4P34096 147 aaKnown RBP16.27■□□□□ 0.19
TRIM28-201ENST00000253024 VPS25Q9BRG1 176 aa16.27■□□□□ 0.19
TRIM28-201ENST00000253024 TMEM8BA6NDV4 472 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 OOSP1A8MZH6 123 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 SMIM17P0DL12 118 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 RPL39LQ96EH5 51 aaKnown RBP16.26■□□□□ 0.19
TRIM28-201ENST00000253024 GNRH2O43555 120 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 CD5LO43866 347 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 SAP30O75446 220 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 ARL6IP6Q8N6S5 226 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 MRPL35Q9NZE8 188 aaKnown RBP16.26■□□□□ 0.19
TRIM28-201ENST00000253024 GAGE12BA1L429 117 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 GAGE10A6NGK3 116 aa16.26■□□□□ 0.19
TRIM28-201ENST00000253024 IGHV7-4-1A0A0J9YVY3 117 aa16.25■□□□□ 0.19
TRIM28-201ENST00000253024 ITLN2Q8WWU7 325 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-201ENST00000253024 CST9LQ9H4G1 147 aa16.25■□□□□ 0.19
TRIM28-201ENST00000253024 WNK1Q9H4A3 2382 aa16.25■□□□□ 0.19
TRIM28-201ENST00000253024 LINC01559Q495D7 138 aa16.25■□□□□ 0.19
TRIM28-201ENST00000253024 MXRA5Q9NR99 2828 aa16.25■□□□□ 0.19
TRIM28-201ENST00000253024 ODF1Q14990 250 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 C10orf99Q6UWK7 81 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 BOD1L2Q8IYS8 172 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 ANKRD17O75179 2603 aaKnown RBP16.24■□□□□ 0.19
TRIM28-201ENST00000253024 EMP1P54849 157 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 UCNP55089 124 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 SMIM15Q7Z3B0 74 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 SLC50A1Q9BRV3 221 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 CCDC168Q8NDH2 2452 aa16.24■□□□□ 0.19
TRIM28-201ENST00000253024 HIST2H2BDQ6DRA6 164 aa16.23■□□□□ 0.19
TRIM28-201ENST00000253024 FXYD2P54710 66 aa16.23■□□□□ 0.19
TRIM28-201ENST00000253024 PIFOQ8TCI5 191 aa16.23■□□□□ 0.19
TRIM28-201ENST00000253024 PEF1Q9UBV8 284 aaKnown RBP16.23■□□□□ 0.19
TRIM28-201ENST00000253024 ZNF462Q96JM2 2506 aa16.22■□□□□ 0.19
TRIM28-201ENST00000253024 JPT2Q9H910 190 aa16.22■□□□□ 0.19
TRIM28-201ENST00000253024 DOPEY1Q5JWR5 2465 aa16.21■□□□□ 0.19
TRIM28-201ENST00000253024 FBN2P35556 2912 aa16.21■□□□□ 0.19
TRIM28-201ENST00000253024 MTURNQ8N3F0 131 aa16.21■□□□□ 0.19
TRIM28-201ENST00000253024 MOB4Q9Y3A3 225 aa16.21■□□□□ 0.19
TRIM28-201ENST00000253024 IGKCP01834 107 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 TRBV7-1A0A0A6YYK4 115 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 ANXA2RQ3ZCQ2 193 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 GPHB5Q86YW7 130 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 SPOCK3Q9BQ16 436 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 A0A0G2JLM5 398 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 MAPKAPK5-AS1Q8N8E1 139 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 PSMG3-AS1Q96PY0 264 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 HHLA3Q9XRX5 114 aa16.2■□□□□ 0.18
TRIM28-201ENST00000253024 IGHV4-30-2A0A087WSY4 118 aa16.19■□□□□ 0.18
TRIM28-201ENST00000253024 ADAMTSL5Q6ZMM2 481 aa16.19■□□□□ 0.18
TRIM28-201ENST00000253024 DUX5Q96PT3 197 aa16.19■□□□□ 0.18
TRIM28-201ENST00000253024 NXT2Q9NPJ8 142 aaKnown RBP16.19■□□□□ 0.18
TRIM28-201ENST00000253024 NHP2Q9NX24 153 aaKnown RBP16.19■□□□□ 0.18
TRIM28-201ENST00000253024 PHLDA3Q9Y5J5 127 aa16.19■□□□□ 0.18
TRIM28-201ENST00000253024 C2CD3Q4AC94 2353 aa16.19■□□□□ 0.18
TRIM28-201ENST00000253024 NAV2Q8IVL1 2488 aa16.19■□□□□ 0.18
TRIM28-201ENST00000253024 IGHV1-69DA0A0B4J2H0 117 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 IGHV1-69P01742 117 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 NRACQ8N912 160 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 EPG5Q9HCE0 2579 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 ATP5J2P56134 94 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 RIPPLY3P57055 190 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 OCIAD2Q56VL3 154 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 SFTA2Q6UW10 78 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 COX8CQ7Z4L0 72 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 OR4X2Q8NGF9 303 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 MYOZ3Q8TDC0 251 aa16.18■□□□□ 0.18
TRIM28-201ENST00000253024 PPBPP02775 128 aa16.17■□□□□ 0.18
TRIM28-201ENST00000253024 NACAE9PAV3 2078 aa16.17■□□□□ 0.18
TRIM28-201ENST00000253024 A0A087WWL8 130 aa16.17■□□□□ 0.18
TRIM28-201ENST00000253024 AVPP01185 164 aa16.17■□□□□ 0.18
TRIM28-201ENST00000253024 LAGE3Q14657 143 aa16.17■□□□□ 0.18
TRIM28-201ENST00000253024 OR10J6PQ8NGY7 276 aa16.17■□□□□ 0.18
TRIM28-201ENST00000253024 TEX15Q9BXT5 2789 aa16.16■□□□□ 0.18
TRIM28-201ENST00000253024 A6NDN8 102 aa16.16■□□□□ 0.18
TRIM28-201ENST00000253024 Q8N8P6 123 aa16.16■□□□□ 0.18
TRIM28-201ENST00000253024 HSD52Q0P140 79 aa16.16■□□□□ 0.18
TRIM28-201ENST00000253024 CCL19Q99731 98 aa16.16■□□□□ 0.18
TRIM28-201ENST00000253024 CHAC1Q9BUX1 264 aa16.16■□□□□ 0.18
TRIM28-201ENST00000253024 RHPN1-AS1Q9BWJ2 59 aa16.16■□□□□ 0.18
TRIM28-201ENST00000253024 HTN1P15515 57 aa16.15■□□□□ 0.18
TRIM28-201ENST00000253024 RAB9AP51151 201 aa16.15■□□□□ 0.18
TRIM28-201ENST00000253024 CNFNQ9BYD5 112 aa16.15■□□□□ 0.18
TRIM28-201ENST00000253024 TRAV12-2A0A075B6T6 113 aa16.15■□□□□ 0.18
TRIM28-201ENST00000253024 FAM74A4Q5TZK3 123 aa16.15■□□□□ 0.18
TRIM28-201ENST00000253024 NF1P21359 2839 aa16.15■□□□□ 0.18
TRIM28-201ENST00000253024 IGLV2-18A0A075B6J9 118 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 TRBV25-1A0A075B6N4 114 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 DPM2O94777 84 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 SEC11AP67812 179 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 ZFAND2AQ8N6M9 145 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 MUC4Q99102 2169 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 DPF1Q92782 380 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 OR1N2Q8NGR9 330 aa16.14■□□□□ 0.17
TRIM28-201ENST00000253024 C9orf118A6NHY6 69 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms