RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 JOSD1Q15040 202 aaPredicted RBP13.53□□□□□ -0.24
VIM-201ENST00000224237 KLLNB2CW77 178 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 MAST4O15021 2626 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 APCSP02743 223 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 IGLC6P0CF74 106 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 CTRLP40313 264 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 LYZL1Q6UWQ5 148 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 ZNF575Q86XF7 245 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 FER1L6-AS1Q8NA97 138 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 C11orf21Q9P2W6 132 aa13.53□□□□□ -0.24
VIM-201ENST00000224237 SLAQ13239 276 aa13.52□□□□□ -0.25
VIM-201ENST00000224237 ESDP10768 282 aa13.51□□□□□ -0.25
VIM-201ENST00000224237 LEPP41159 167 aa13.51□□□□□ -0.25
VIM-201ENST00000224237 DEFB131AP59861 70 aa13.51□□□□□ -0.25
VIM-201ENST00000224237 RNASE4P34096 147 aaKnown RBP13.5□□□□□ -0.25
VIM-201ENST00000224237 TMEM256Q8N2U0 113 aa13.5□□□□□ -0.25
VIM-201ENST00000224237 ZNF256Q9Y2P7 627 aaPredicted RBP13.5□□□□□ -0.25
VIM-201ENST00000224237 ATRQ13535 2644 aa13.5□□□□□ -0.25
VIM-201ENST00000224237 GRIFINA4D1Z8 144 aa13.5□□□□□ -0.25
VIM-201ENST00000224237 SSBP4Q9BWG4 385 aaPredicted RBP13.5□□□□□ -0.25
VIM-201ENST00000224237 SORL1Q92673 2214 aa13.5□□□□□ -0.25
VIM-201ENST00000224237 F2Z2F3 143 aa13.49□□□□□ -0.25
VIM-201ENST00000224237 SAP30O75446 220 aa13.49□□□□□ -0.25
VIM-201ENST00000224237 OR10J3Q5JRS4 329 aa13.49□□□□□ -0.25
VIM-201ENST00000224237 Q6ZQT7 251 aa13.49□□□□□ -0.25
VIM-201ENST00000224237 GATD1Q8NB37 220 aa13.49□□□□□ -0.25
VIM-201ENST00000224237 MAP6D1Q9H9H5 199 aa13.49□□□□□ -0.25
VIM-201ENST00000224237 PF4P02776 101 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 TSPOP30536 169 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 KIR3DS1Q14943 382 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 KIAA1644Q3SXP7 199 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 CNFNQ9BYD5 112 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 HLA-DRB4P13762 266 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 CDKN1BP46527 198 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 NAGKQ9UJ70 344 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 TP53TG3Q9ULZ0 132 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 HLA-DRB4X5D2U9 266 aa13.48□□□□□ -0.25
VIM-201ENST00000224237 NUPR1O60356 82 aa13.47□□□□□ -0.25
VIM-201ENST00000224237 IGKV3-20P01619 116 aa13.47□□□□□ -0.25
VIM-201ENST00000224237 SRIP30626 198 aa13.46□□□□□ -0.25
VIM-201ENST00000224237 CDPF1Q6NVV7 123 aa13.46□□□□□ -0.25
VIM-201ENST00000224237 BAGE3Q86Y29 109 aa13.46□□□□□ -0.25
VIM-201ENST00000224237 OR2K2Q8NGT1 345 aa13.46□□□□□ -0.25
VIM-201ENST00000224237 C7orf71A4D174 169 aa13.46□□□□□ -0.26
VIM-201ENST00000224237 A8MTW9 85 aa13.46□□□□□ -0.26
VIM-201ENST00000224237 IGLV1-51P01701 117 aa13.46□□□□□ -0.26
VIM-201ENST00000224237 ZNF493Q6ZR52 646 aa13.46□□□□□ -0.26
VIM-201ENST00000224237 KNCNA6PVL3 124 aa13.45□□□□□ -0.26
VIM-201ENST00000224237 H3BMM0 161 aa13.45□□□□□ -0.26
VIM-201ENST00000224237 OR5AL1P0C617 328 aa13.45□□□□□ -0.26
VIM-201ENST00000224237 ANXA2RQ3ZCQ2 193 aa13.45□□□□□ -0.26
VIM-201ENST00000224237 AMTNQ6UX39 209 aa13.45□□□□□ -0.26
VIM-201ENST00000224237 LINC00587B1AMM8 73 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 NTF3P20783 257 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 TWIST1Q15672 202 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 SPINK13Q1W4C9 94 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 MUC21Q5SSG8 566 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 LINC00482Q8N8I6 264 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 TRAV12-3A0A0B4J271 114 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 MUC21A0A0G2JKD1 596 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 MUC21A0A140T8X8 626 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 M0R2Z0 102 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 SNAI2O43623 268 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 SERF1AO75920 110 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 SSTP61278 116 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 FAM159AQ6UWV7 190 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 CITED1Q99966 193 aa13.44□□□□□ -0.26
VIM-201ENST00000224237 VWFP04275 2813 aa13.43□□□□□ -0.26
VIM-201ENST00000224237 LOC102724200A0A096LPH7 203 aaPredicted RBP13.43□□□□□ -0.26
VIM-201ENST00000224237 ZNF324O75467 553 aaPredicted RBP13.43□□□□□ -0.26
VIM-201ENST00000224237 ASIPP42127 132 aa13.43□□□□□ -0.26
VIM-201ENST00000224237 LINC00310P59036 64 aa13.43□□□□□ -0.26
VIM-201ENST00000224237 IQCJQ1A5X6 159 aa13.43□□□□□ -0.26
VIM-201ENST00000224237 ODF3L2Q3SX64 289 aa13.43□□□□□ -0.26
VIM-201ENST00000224237 KCNS1Q96KK3 526 aa13.43□□□□□ -0.26
VIM-201ENST00000224237 AGRNO00468 2067 aa13.43□□□□□ -0.26
VIM-201ENST00000224237 TRAV12-2A0A075B6T6 113 aa13.42□□□□□ -0.26
VIM-201ENST00000224237 S100A4P26447 101 aaKnown RBP13.42□□□□□ -0.26
VIM-201ENST00000224237 ZNF124Q15973 351 aa13.42□□□□□ -0.26
VIM-201ENST00000224237 ALKBH7Q9BT30 221 aaPredicted RBP13.42□□□□□ -0.26
VIM-201ENST00000224237 H3BVH4 76 aa13.42□□□□□ -0.26
VIM-201ENST00000224237 MED14OSP0DP75 135 aa13.42□□□□□ -0.26
VIM-201ENST00000224237 PRR31Q5SQ13 230 aa13.42□□□□□ -0.26
VIM-201ENST00000224237 OR11H12B2RN74 326 aa13.41□□□□□ -0.26
VIM-201ENST00000224237 CMC4P56277 68 aaPredicted RBP13.41□□□□□ -0.26
VIM-201ENST00000224237 PKIAP61925 76 aa13.41□□□□□ -0.26
VIM-201ENST00000224237 CACNG7P62955 275 aa13.41□□□□□ -0.26
VIM-201ENST00000224237 KRTAP24-1Q3LI83 254 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 TDRG1Q3Y452 100 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 OR10AG1Q8NH19 301 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 C18orf32Q8TCD1 76 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 CLUHP3Q96NS8 147 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 TMEM191AQ9H0A3 160 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 IGHV4-4A0A075B6R2 117 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 SPANXN1Q5VSR9 72 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 FAM104BQ5XKR9 115 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 SPATA3Q8NHX4 192 aa13.4□□□□□ -0.26
VIM-201ENST00000224237 TSTD3H0UI37 97 aa13.39□□□□□ -0.27
VIM-201ENST00000224237 FAM110AQ9BQ89 295 aa13.39□□□□□ -0.27
VIM-201ENST00000224237 SAMD10Q9BYL1 202 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms