RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 DEPPQ9NTK1 212 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 IGKV1-5P01602 117 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 INSL3P51460 131 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 UNQ6494/PRO21346Q6UXR6 183 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 C10orf105Q8TEF2 133 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 C16orf74Q96GX8 76 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 IGF2RP11717 2491 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 IGKV2-40A0A087WW87 121 aaPredicted RBP4.88□□□□□ -1.63
VPS13D-201ENST00000011700 IGKV2D-40P01614 121 aaPredicted RBP4.88□□□□□ -1.63
VPS13D-201ENST00000011700 SYNJ2BPP57105 145 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 C16orf54Q6UWD8 224 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 ZC2HC1AQ96GY0 325 aa4.88□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3-48P01763 117 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 FAM27E3Q08E93 113 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 MRPL55Q7Z7F7 128 aaKnown RBP4.87□□□□□ -1.63
VPS13D-201ENST00000011700 Q8NFD4 153 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 TSSC4Q9Y5U2 329 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-201ENST00000011700 SAA4P35542 130 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 ETDBQ3ZM63 59 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 HAMPP81172 84 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 H3BRN7 92 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 RPL15P61313 204 aaKnown RBP4.87□□□□□ -1.63
VPS13D-201ENST00000011700 C8orf86Q6ZUL3 223 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 C9orf106Q8NAJ2 232 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 TRBV6-1A0A0K0K1D8 114 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 MSMBP08118 114 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 MRPS36P82909 103 aaKnown RBP4.87□□□□□ -1.63
VPS13D-201ENST00000011700 DEFB125Q8N687 156 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 SCRT2Q9NQ03 307 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 V9GYV3 84 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 CEP295Q9C0D2 2601 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 TRAV13-1A0A0B4J241 112 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 H3BTX0 84 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 WFDC1Q9HC57 220 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 Q8N1Y9 231 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 TIMM17AQ99595 171 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 IGKV3D-20A0A0C4DH25 116 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 CFC1BP0CG36 223 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 CFC1P0CG37 223 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 UBE2AP49459 152 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 PROP1O75360 226 aa4.87□□□□□ -1.63
VPS13D-201ENST00000011700 J3QKU1 62 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 CELA2AP08217 269 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 GPHA2Q96T91 129 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 MSRB2Q9Y3D2 182 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 A0A0J9YXY3 114 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 H3BUX3 64 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV1-69P01742 117 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 FAM219BQ5XKK7 198 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 ATRAIDQ6UW56 229 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 TRBV10-1A0A0K0K1A3 114 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 CD59P13987 128 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 NTF4P34130 210 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 ZNF524Q96C55 264 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 C4orf51C9J302 202 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 IGF2-ASQ6U949 168 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 LYZL4Q96KX0 146 aa4.86□□□□□ -1.63
VPS13D-201ENST00000011700 hDV102S1A0JD36 115 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 SHISA3A0PJX4 238 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 UQCRQO14949 82 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 CELA3BP08861 270 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 DEFB121Q5J5C9 76 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 LINC01560Q8TB33 94 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 TRBV7-3A0A075B6L6 115 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 SNRPCP09234 159 aaKnown RBP4.85□□□□□ -1.63
VPS13D-201ENST00000011700 ODF3Q96PU9 254 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 HTN3P15516 51 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 Q6ZS92 163 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 MRAPQ8TCY5 172 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 SLX1AQ9BQ83 275 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3-49A0A0A0MS15 119 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 MDS2Q8NDY4 140 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3-66A0A0C4DH42 116 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 LHBP01229 141 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 SPATA12Q7Z6I5 190 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3OR16-13A0A075B7E8 117 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3-74A0A0B4J1X5 117 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 MRPL51Q4U2R6 128 aaKnown RBP4.85□□□□□ -1.63
VPS13D-201ENST00000011700 COL4A6Q14031 1691 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3-11P01762 117 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 GAFA1Q96PS6 74 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 POLR3KQ9Y2Y1 108 aaPredicted RBP4.85□□□□□ -1.63
VPS13D-201ENST00000011700 MST1P26927 711 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 MST1LQ2TV78 715 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 NREPQ16612 68 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 GFI1BQ5VTD9 330 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 VSIRQ9H7M9 311 aa4.85□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3-35A0A0C4DH35 117 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV7-4-1A0A0J9YVY3 117 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 IGFBP6P24592 240 aaPredicted RBP4.84□□□□□ -1.63
VPS13D-201ENST00000011700 TCF15Q12870 199 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 LINC00643Q86TS7 51 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 PATE3B3GLJ2 98 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 CRIM1Q9NZV1 1036 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 SPRR3Q9UBC9 169 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 BAALC-AS2P0C853 105 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 PCSK5Q92824 1860 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 SPACA3Q8IXA5 215 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 IGHV3-64A0A075B6Q5 118 aa4.84□□□□□ -1.63
VPS13D-201ENST00000011700 LINC00473A8K010 186 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms