RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 Q6AWC8 147 aa13.85□□□□□ -0.19
SHKBP1-221ENST00000599833 DPPA3Q6W0C5 159 aa13.85□□□□□ -0.19
SHKBP1-221ENST00000599833 C11orf72Q8NBR9 251 aa13.85□□□□□ -0.19
SHKBP1-221ENST00000599833 C16orf74Q96GX8 76 aa13.85□□□□□ -0.19
SHKBP1-221ENST00000599833 PYGO2Q9BRQ0 406 aa13.85□□□□□ -0.19
SHKBP1-221ENST00000599833 LCE6AA0A183 80 aa13.84□□□□□ -0.19
SHKBP1-221ENST00000599833 GPX1P07203 203 aa13.84□□□□□ -0.19
SHKBP1-221ENST00000599833 SLC51BQ86UW2 128 aa13.84□□□□□ -0.19
SHKBP1-221ENST00000599833 IQCF2Q8IXL9 164 aa13.84□□□□□ -0.19
SHKBP1-221ENST00000599833 SGK494Q96LW2 274 aa13.84□□□□□ -0.19
SHKBP1-221ENST00000599833 NIPSNAP3BQ9BS92 247 aa13.84□□□□□ -0.19
SHKBP1-221ENST00000599833 DNAH10Q8IVF4 4471 aa13.83□□□□□ -0.2
SHKBP1-221ENST00000599833 SERTM2A0A1B0GWG4 89 aa13.83□□□□□ -0.2
SHKBP1-221ENST00000599833 C11orf94C9JXX5 98 aa13.83□□□□□ -0.2
SHKBP1-221ENST00000599833 ZFP69Q49AA0 526 aa13.83□□□□□ -0.2
SHKBP1-221ENST00000599833 ZNF493Q6ZR52 646 aa13.83□□□□□ -0.2
SHKBP1-221ENST00000599833 LINC00612Q8N6U2 182 aa13.83□□□□□ -0.2
SHKBP1-221ENST00000599833 TRAV10A0A0B4J240 114 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 TEX48A0A1B0GUV7 120 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 LYRM9A8MSI8 78 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 HTN1P15515 57 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 SULT1A2P50226 295 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 ANXA2RQ3ZCQ2 193 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 TMEM75Q8N9X5 138 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 SFT2D1Q8WV19 159 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 LINC00479Q96M42 142 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 ATG101Q9BSB4 218 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 TP53TG3Q9ULZ0 132 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 ARL2-SNX15V9GYD0 113 aa13.82□□□□□ -0.2
SHKBP1-221ENST00000599833 CYB561D1Q8N8Q1 229 aa13.81□□□□□ -0.2
SHKBP1-221ENST00000599833 TRAV1-1A0A0B4J248 108 aa13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 ZNF80P51504 273 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 NKX2-5P52952 324 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 CCL20P78556 96 aa13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 C2CD4CQ8TF44 421 aa13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 APLNQ9ULZ1 77 aa13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 PSG8Q9UQ74 426 aa13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 KLK5Q9Y337 293 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 DNAH2Q9P225 4427 aa13.8□□□□□ -0.2
SHKBP1-221ENST00000599833 IGHV1OR15-1A0A075B7D0 117 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 DEFB131BA0A096LNP1 70 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 A0A1B0GV50 99 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 F6UZH7 168 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 PEX7O00628 323 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 H2AFB1P0C5Y9 115 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 ATP5G3P48201 142 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 EIF4E3Q8N5X7 224 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 C8orf49Q96NF6 230 aa13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 NOP10Q9NPE3 64 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 TIMM8BQ9Y5J9 83 aaPredicted RBP13.79□□□□□ -0.2
SHKBP1-221ENST00000599833 TRAV34A0A0B4J273 112 aa13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 PAGE4O60829 102 aa13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 RAB5CP51148 216 aa13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 FLI1Q01543 452 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 DAZ2Q13117 558 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 NKX6-2Q9C056 277 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 TREM1Q9NP99 234 aa13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 BOLA1Q9Y3E2 137 aa13.78□□□□□ -0.2
SHKBP1-221ENST00000599833 TDRG1Q3Y452 100 aa13.77□□□□□ -0.21
SHKBP1-221ENST00000599833 LINC00476Q8WZB0 136 aa13.77□□□□□ -0.21
SHKBP1-221ENST00000599833 GSN-AS1Q9NRJ2 163 aa13.77□□□□□ -0.21
SHKBP1-221ENST00000599833 C11orf21Q9P2W6 132 aa13.77□□□□□ -0.21
SHKBP1-221ENST00000599833 KLF12Q9Y4X4 402 aa13.77□□□□□ -0.21
SHKBP1-221ENST00000599833 TCL1AP56279 114 aa13.76□□□□□ -0.21
SHKBP1-221ENST00000599833 DAD1P61803 113 aa13.76□□□□□ -0.21
SHKBP1-221ENST00000599833 IBA57Q5T440 356 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-221ENST00000599833 EIF5AL1Q6IS14 154 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-221ENST00000599833 HIST1H2BAQ96A08 127 aa13.76□□□□□ -0.21
SHKBP1-221ENST00000599833 IGHV4-4A0A075B6R2 117 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 CBY3A6NI87 242 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 IGLL5B9A064 214 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 MUC21Q5SSG8 566 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 COX8CQ7Z4L0 72 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 PRNTQ86SH4 94 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 Q86TA4 180 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 ZNF680Q8NEM1 530 aa13.75□□□□□ -0.21
SHKBP1-221ENST00000599833 TRBV6-1A0A0K0K1D8 114 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 FBLL1A6NHQ2 334 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 K7EQM0 130 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 RGS13O14921 159 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 SPINK4O60575 86 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 IFNA7P01567 189 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 DEFB130BP0DP73 79 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 DEFB130AP0DP74 79 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 Q6ZTI0 123 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 TCEAL7Q9BRU2 100 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 MDFICQ9P1T7 246 aa13.74□□□□□ -0.21
SHKBP1-221ENST00000599833 TRAV21A0A0B4J279 112 aa13.73□□□□□ -0.21
SHKBP1-221ENST00000599833 TCTAP57738 103 aa13.73□□□□□ -0.21
SHKBP1-221ENST00000599833 CST9LP1Q5W188 147 aa13.73□□□□□ -0.21
SHKBP1-221ENST00000599833 MUC4Q99102 2169 aa13.73□□□□□ -0.21
SHKBP1-221ENST00000599833 GCGP01275 180 aa13.72□□□□□ -0.21
SHKBP1-221ENST00000599833 CRIP1P50238 77 aa13.72□□□□□ -0.21
SHKBP1-221ENST00000599833 C18orf15Q96N68 181 aa13.72□□□□□ -0.21
SHKBP1-221ENST00000599833 DNAH17Q9UFH2 4485 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 SCO2A0A1W2PP80 73 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 GAGE12BA1L429 117 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 SNURFLB1AK76 121 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 GAGE7O76087 117 aa13.71□□□□□ -0.21
SHKBP1-221ENST00000599833 GAGE12FP0CL80 117 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms