RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 TMEM189A5PLL7 270 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 ARMS2P0C7Q2 107 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 ZNF705DP0CH99 300 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 ZNF705BP0CI00 300 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 RPL11P62913 178 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 ZNF575Q86XF7 245 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 NDFIP1Q9BT67 221 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 IGKV3-7A0A075B6H7 116 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 FAM181BA6NEQ2 426 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 K7EMT4 169 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 HAX1O00165 279 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 TMEM18Q96B42 140 aa12.92□□□□□ -0.34
SHKBP1-216ENST00000598201 LGALS1P09382 135 aaKnown RBP12.91□□□□□ -0.34
SHKBP1-216ENST00000598201 C9orf47Q6ZRZ4 202 aa12.91□□□□□ -0.34
SHKBP1-216ENST00000598201 RNF152Q8N8N0 203 aa12.91□□□□□ -0.34
SHKBP1-216ENST00000598201 RCHY1Q96PM5 261 aa12.91□□□□□ -0.34
SHKBP1-216ENST00000598201 TPPP3Q9BW30 176 aa12.91□□□□□ -0.34
SHKBP1-216ENST00000598201 NRN1Q9NPD7 142 aa12.91□□□□□ -0.34
SHKBP1-216ENST00000598201 NIPBLQ6KC79 2804 aaeCLIP12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 A0A1B0GUT8 65 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 ESDP10768 282 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 ZNF138P52744 262 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 DEFB1P60022 68 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 OR10J3Q5JRS4 329 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 ZNF738Q8NE65 137 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 IGHV4OR15-8A0A075B7B6 117 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 A0A087WW49 117 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 TMEM213A2RRL7 107 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 BMI1P35226 326 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 TMEM78Q5T7P6 136 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 UBE2E2Q96LR5 201 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 CLEC5AQ9NY25 188 aa12.9□□□□□ -0.34
SHKBP1-216ENST00000598201 IQCJQ1A5X6 159 aa12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 C18orf65Q6ZTR6 163 aa12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 C18orf32Q8TCD1 76 aa12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 ALKBH7Q9BT30 221 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 UFC1Q9Y3C8 167 aa12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 CUBNO60494 3623 aa12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 LYZL1Q6UWQ5 148 aa12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 TMEM86BQ8N661 226 aa12.89□□□□□ -0.35
SHKBP1-216ENST00000598201 DNAJC9-AS1A6NH13 148 aa12.88□□□□□ -0.35
SHKBP1-216ENST00000598201 FABP5P3A8MUU1 101 aa12.88□□□□□ -0.35
SHKBP1-216ENST00000598201 COTL1Q14019 142 aa12.88□□□□□ -0.35
SHKBP1-216ENST00000598201 SYNJ2BPP57105 145 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 Q6AWC8 147 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 KLHDC1Q8N7A1 406 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 ESM1Q9NQ30 184 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 MUC21A0A0G2JKD1 596 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 MUC21A0A140T8X8 626 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 ORM1P02763 201 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 RIGQ13278 110 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 JOSD1Q15040 202 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 MUC21Q5SSG8 566 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 Q6ZQT7 251 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 C11orf21Q9P2W6 132 aa12.87□□□□□ -0.35
SHKBP1-216ENST00000598201 F6UB75 175 aa12.86□□□□□ -0.35
SHKBP1-216ENST00000598201 HOXD3P31249 432 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-216ENST00000598201 TCTEX1D4Q5JR98 221 aa12.86□□□□□ -0.35
SHKBP1-216ENST00000598201 SRSF2Q01130 221 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 KLF5Q13887 457 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 DEFB136Q30KP8 78 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 PRR9Q5T870 116 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 HIST2H2BDQ6DRA6 164 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 Q6ZSV7 163 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 ZNF418Q8TF45 676 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 LOC102724200A0A096LPH7 203 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 IGLC6P0CF74 106 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 RPS20P60866 119 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 LINC01559Q495D7 138 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 DCANP1Q8TF63 244 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 NDUFAF3Q9BU61 184 aa12.85□□□□□ -0.35
SHKBP1-216ENST00000598201 IGKV3D-20A0A0C4DH25 116 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 OVOL1O14753 267 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 PAFAH1B2P68402 229 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 FER1L6-AS1Q8NA97 138 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 GATD1Q8NB37 220 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 KCNS1Q96KK3 526 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 LGALS9O00182 355 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 CD33P20138 364 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 CTRLP40313 264 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 GAGE1Q13065 139 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 Q6ZWC4 215 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 WFDC3Q8IUB2 231 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 OR10J6PQ8NGY7 276 aa12.84□□□□□ -0.35
SHKBP1-216ENST00000598201 LINC00614P0C842 121 aa12.83□□□□□ -0.36
SHKBP1-216ENST00000598201 BORCS7Q96B45 105 aa12.83□□□□□ -0.36
SHKBP1-216ENST00000598201 LINC00477Q96M19 166 aa12.83□□□□□ -0.36
SHKBP1-216ENST00000598201 SAMD10Q9BYL1 202 aa12.83□□□□□ -0.36
SHKBP1-216ENST00000598201 A0A1B0GW15 77 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 GPX1P07203 203 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 HIST1H1AQ02539 215 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 OR8A1Q8NGG7 326 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 SETD2Q9BYW2 2564 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 J3KRW8 73 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 SLURP1P55000 103 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 HILS1P60008 231 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 ZFAND2AQ8N6M9 145 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 MS4A6AQ9H2W1 248 aa12.82□□□□□ -0.36
SHKBP1-216ENST00000598201 TCF21O43680 179 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 PMCHP20382 165 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms