RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 RNASE4P34096 147 aaKnown RBP10.61□□□□□ -0.71
LIG1-214ENST00000597146 RGS21Q2M5E4 152 aa10.61□□□□□ -0.71
LIG1-214ENST00000597146 KHDC3LQ587J8 217 aa10.61□□□□□ -0.71
LIG1-214ENST00000597146 FAM167A-AS1Q96KT0 104 aa10.61□□□□□ -0.71
LIG1-214ENST00000597146 TNFRSF18Q9Y5U5 241 aa10.61□□□□□ -0.71
LIG1-214ENST00000597146 TRAV26-1A0A087WT03 109 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 A0A0J9YY99 117 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 SNURFLB1AK76 121 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 SLC25A5P05141 298 aaKnown RBP10.6□□□□□ -0.71
LIG1-214ENST00000597146 UBE2L3P68036 154 aaKnown RBP10.6□□□□□ -0.71
LIG1-214ENST00000597146 ZNF266Q14584 549 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 FAM74A1Q5RGS3 127 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 GFI1BQ5VTD9 330 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 GNPNAT1Q96EK6 184 aaPredicted RBP10.6□□□□□ -0.71
LIG1-214ENST00000597146 ODF3Q96PU9 254 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 AGPAT4-IT1Q9H0P7 198 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 WFDC1Q9HC57 220 aa10.6□□□□□ -0.71
LIG1-214ENST00000597146 NOP10Q9NPE3 64 aaKnown RBP10.6□□□□□ -0.71
LIG1-214ENST00000597146 A0A087WTM6 91 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 OR5I1Q13606 314 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 KIR3DS1Q14943 382 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 OR10G4Q8NGN3 311 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 OR10G9Q8NGN4 311 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 OR10G7Q8NGN6 311 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 CMTM2Q8TAZ6 248 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 TMEM263Q8WUH6 116 aaKnown RBP10.59□□□□□ -0.71
LIG1-214ENST00000597146 FXYD5Q96DB9 178 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 HYLS1Q96M11 299 aa10.59□□□□□ -0.71
LIG1-214ENST00000597146 IGKV2-40A0A087WW87 121 aaPredicted RBP10.58□□□□□ -0.72
LIG1-214ENST00000597146 C7orf71A4D174 169 aa10.58□□□□□ -0.72
LIG1-214ENST00000597146 IGKV2D-40P01614 121 aaPredicted RBP10.58□□□□□ -0.72
LIG1-214ENST00000597146 GIPP09681 153 aaPredicted RBP10.58□□□□□ -0.72
LIG1-214ENST00000597146 M6PRP20645 277 aa10.58□□□□□ -0.72
LIG1-214ENST00000597146 GCSHP23434 173 aa10.58□□□□□ -0.72
LIG1-214ENST00000597146 HSD17B11Q8NBQ5 300 aa10.58□□□□□ -0.72
LIG1-214ENST00000597146 RXFP4Q8TDU9 374 aa10.58□□□□□ -0.72
LIG1-214ENST00000597146 ASB13Q8WXK3 278 aa10.58□□□□□ -0.72
LIG1-214ENST00000597146 PYGO2Q9BRQ0 406 aa10.58□□□□□ -0.72
LIG1-214ENST00000597146 FXYD6-FXYD2A0A087WZ82 144 aa10.57□□□□□ -0.72
LIG1-214ENST00000597146 BORCS7-ASMTA0A0B4J1R7 106 aa10.57□□□□□ -0.72
LIG1-214ENST00000597146 C9orf47Q6ZRZ4 202 aa10.57□□□□□ -0.72
LIG1-214ENST00000597146 PGPA6NDG6 321 aa10.56□□□□□ -0.72
LIG1-214ENST00000597146 RGS13O14921 159 aa10.56□□□□□ -0.72
LIG1-214ENST00000597146 ZNF138P52744 262 aa10.56□□□□□ -0.72
LIG1-214ENST00000597146 PQLC2Q6ZP29 291 aa10.56□□□□□ -0.72
LIG1-214ENST00000597146 PHYHIPLQ96FC7 376 aa10.56□□□□□ -0.72
LIG1-214ENST00000597146 VGLL1Q99990 258 aa10.56□□□□□ -0.72
LIG1-214ENST00000597146 RPH3ALQ9UNE2 315 aa10.56□□□□□ -0.72
LIG1-214ENST00000597146 GAGE12BA1L429 117 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 HMGB3O15347 200 aaKnown RBP10.55□□□□□ -0.72
LIG1-214ENST00000597146 EIF3GO75821 320 aaKnown RBP eCLIP10.55□□□□□ -0.72
LIG1-214ENST00000597146 GAGE7O76087 117 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 MBP02144 154 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 GAGE12FP0CL80 117 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 GAGE12GP0CL81 117 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 GAGE12IP0CL82 117 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 HOXA5P20719 270 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 RAB2AP61019 212 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 CD300CQ08708 224 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 AQP10Q96PS8 301 aa10.55□□□□□ -0.72
LIG1-214ENST00000597146 NMBP08949 121 aa10.54□□□□□ -0.72
LIG1-214ENST00000597146 BTN1A1Q13410 526 aa10.54□□□□□ -0.72
LIG1-214ENST00000597146 IQCF2Q8IXL9 164 aa10.54□□□□□ -0.72
LIG1-214ENST00000597146 EIF4E3Q8N5X7 224 aaKnown RBP10.54□□□□□ -0.72
LIG1-214ENST00000597146 OR2T35Q8NGX2 323 aa10.54□□□□□ -0.72
LIG1-214ENST00000597146 RNASE8Q8TDE3 154 aaKnown RBP10.54□□□□□ -0.72
LIG1-214ENST00000597146 ARPC5LQ9BPX5 153 aa10.54□□□□□ -0.72
LIG1-214ENST00000597146 OTORQ9NRC9 128 aa10.54□□□□□ -0.72
LIG1-214ENST00000597146 ZNF492Q9P255 531 aa10.54□□□□□ -0.72
LIG1-214ENST00000597146 TRGV2A0A075B6R0 118 aa10.53□□□□□ -0.72
LIG1-214ENST00000597146 CDC34P49427 236 aaPredicted RBP10.53□□□□□ -0.72
LIG1-214ENST00000597146 Q5BKY6 102 aa10.53□□□□□ -0.72
LIG1-214ENST00000597146 ZNF680Q8NEM1 530 aa10.53□□□□□ -0.72
LIG1-214ENST00000597146 TMEM70Q9BUB7 260 aa10.53□□□□□ -0.72
LIG1-214ENST00000597146 ACTR3CQ9C0K3 210 aaPredicted RBP10.53□□□□□ -0.72
LIG1-214ENST00000597146 GSN-AS1Q9NRJ2 163 aa10.53□□□□□ -0.72
LIG1-214ENST00000597146 RBAKDNA6NC62 111 aa10.52□□□□□ -0.73
LIG1-214ENST00000597146 SIVA1O15304 175 aa10.52□□□□□ -0.73
LIG1-214ENST00000597146 CRISP2P16562 243 aa10.52□□□□□ -0.73
LIG1-214ENST00000597146 ATP6V0CP27449 155 aa10.52□□□□□ -0.73
LIG1-214ENST00000597146 SERF2P84101 59 aa10.52□□□□□ -0.73
LIG1-214ENST00000597146 PSMG3Q9BT73 122 aaPredicted RBP10.52□□□□□ -0.73
LIG1-214ENST00000597146 IGHV1OR15-1A0A075B7D0 117 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 KLLNB2CW77 178 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 DIRC3C9JPN6 131 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 PLA2G1BP04054 148 aaKnown RBP10.51□□□□□ -0.73
LIG1-214ENST00000597146 OR2G3Q8NGZ4 309 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 Q8TAT8 98 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 DEFB104AQ8WTQ1 72 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 RAB24Q969Q5 203 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 FAM30AQ9NZY2 134 aa10.51□□□□□ -0.73
LIG1-214ENST00000597146 TRGV1A0A0A0MS02 117 aa10.5□□□□□ -0.73
LIG1-214ENST00000597146 K7EQM0 130 aa10.5□□□□□ -0.73
LIG1-214ENST00000597146 ZNF324O75467 553 aaPredicted RBP10.5□□□□□ -0.73
LIG1-214ENST00000597146 ARL14EPLP0DKL9 152 aa10.5□□□□□ -0.73
LIG1-214ENST00000597146 DAZ2Q13117 558 aaKnown RBP10.5□□□□□ -0.73
LIG1-214ENST00000597146 GOLT1AQ6ZVE7 132 aa10.5□□□□□ -0.73
LIG1-214ENST00000597146 FAM19A4Q96LR4 140 aa10.5□□□□□ -0.73
LIG1-214ENST00000597146 TNFSF18Q9UNG2 199 aa10.5□□□□□ -0.73
LIG1-214ENST00000597146 LRP2P98164 4655 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms