RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 PRSS1P07477 247 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 FABP2P12104 132 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 ERCC8Q13216 396 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 DTX2Q86UW9 622 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 TACC2O95359 2948 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 AKAP13Q12802 2813 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 OOSP1A8MZH6 123 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 ATP5LO75964 103 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 HLA-DRB4P13762 266 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 HLA-DRB4X5D2U9 266 aa11.48□□□□□ -0.57
SMARCA4-219ENST00000592604 PRAC2D3DTV9 90 aa11.47□□□□□ -0.57
SMARCA4-219ENST00000592604 SAMD5Q5TGI4 173 aa11.47□□□□□ -0.57
SMARCA4-219ENST00000592604 FXYD2P54710 66 aa11.47□□□□□ -0.57
SMARCA4-219ENST00000592604 TMEM158Q8WZ71 300 aa11.47□□□□□ -0.57
SMARCA4-219ENST00000592604 IGHV7-81A0A0B4J1V7 117 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 BUB3O43684 328 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 GATA1P15976 413 aaPredicted RBP11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 KLK9Q2XQG4 91 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 VMO1Q7Z5L0 202 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 MRAP2Q96G30 205 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 TIMD4Q96H15 378 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 CHAC1Q9BUX1 264 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 KLK9Q9UKQ9 250 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 ATMQ13315 3056 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 IGKV3D-20A0A0C4DH25 116 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 DPM2O94777 84 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 SMIM17P0DL12 118 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 GCSHP23434 173 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 TCTEX1D4Q5JR98 221 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 ZFAND3Q9H8U3 227 aa11.46□□□□□ -0.57
SMARCA4-219ENST00000592604 TRBV25-1A0A075B6N4 114 aa11.46□□□□□ -0.58
SMARCA4-219ENST00000592604 LY6HO94772 140 aa11.46□□□□□ -0.58
SMARCA4-219ENST00000592604 PHLDA1Q8WV24 401 aaPredicted RBP11.46□□□□□ -0.58
SMARCA4-219ENST00000592604 FOXC2Q99958 501 aa11.46□□□□□ -0.58
SMARCA4-219ENST00000592604 SLC50A1Q9BRV3 221 aa11.46□□□□□ -0.58
SMARCA4-219ENST00000592604 TM2D2Q9BX73 214 aa11.46□□□□□ -0.58
SMARCA4-219ENST00000592604 TTTY13Q9BZ97 58 aa11.46□□□□□ -0.58
SMARCA4-219ENST00000592604 TTC28Q96AY4 2481 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 PPIFP30405 207 aaKnown RBP11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 SRSF1Q07955 248 aaKnown RBP eCLIP11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 TM4SF20Q53R12 229 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 IL17RELQ6ZVW7 336 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 ZNF502Q8TBZ5 544 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 FBXL19-AS1Q494R0 122 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 MINOS1Q5TGZ0 78 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 MINOS1-NBL1R4GNA1 71 aa11.45□□□□□ -0.58
SMARCA4-219ENST00000592604 IGHV3OR16-8A0A075B7F1 116 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 OR11H12B2RN74 326 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 ZC2HC1BQ5TFG8 222 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 OR11H1Q8NG94 326 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 OR11H2Q8NH07 326 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 C11orf21Q9P2W6 132 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 TMEM8BA6NDV4 472 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 GTSCR1Q86UQ5 136 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 Q8N9W7 124 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 FAM110DQ8TAY7 271 aaPredicted RBP11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 ABCA4P78363 2273 aa11.44□□□□□ -0.58
SMARCA4-219ENST00000592604 IGHV3-35A0A0C4DH35 117 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 RNF182Q8N6D2 247 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 NRACQ8N912 160 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 AGPAT4-IT1Q9H0P7 198 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 WNK2Q9Y3S1 2297 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 CEND1Q8N111 149 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 MSRB2Q9Y3D2 182 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 PIEZO2Q9H5I5 2752 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 ZNF292O60281 2723 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 GVINP1Q7Z2Y8 2422 aa11.43□□□□□ -0.58
SMARCA4-219ENST00000592604 GRNP28799 593 aaKnown RBP11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 RPL32P62910 135 aaKnown RBP11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 C15orf32Q32M92 178 aa11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 IGHV4-4A0A075B6R2 117 aa11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 IGHV7-4-1A0A0J9YVY3 117 aa11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 CLPSL1A2RUU4 121 aa11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 TRGV3P03979 118 aa11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 LAGE3Q14657 143 aa11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 MYOZ3Q8TDC0 251 aa11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 MRPL53Q96EL3 112 aaKnown RBP11.42□□□□□ -0.58
SMARCA4-219ENST00000592604 TRAV40A0A0B4J280 105 aa11.41□□□□□ -0.58
SMARCA4-219ENST00000592604 TAL2Q16559 108 aa11.41□□□□□ -0.58
SMARCA4-219ENST00000592604 MRPL35Q9NZE8 188 aaKnown RBP11.41□□□□□ -0.58
SMARCA4-219ENST00000592604 ANKHD1Q8IWZ3 2542 aaKnown RBP11.41□□□□□ -0.58
SMARCA4-219ENST00000592604 FAM90A27PA6NNH2 459 aa11.41□□□□□ -0.58
SMARCA4-219ENST00000592604 TMEM160Q9NX00 188 aa11.41□□□□□ -0.58
SMARCA4-219ENST00000592604 UFC1Q9Y3C8 167 aa11.41□□□□□ -0.58
SMARCA4-219ENST00000592604 A0A087WX48 190 aa11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 TRAV8-2A0A0B4J237 113 aa11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 MTURNQ8N3F0 131 aa11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 GAGE12HA6NDE8 117 aa11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 E9PLD3 99 aa11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 K7ERJ3 54 aa11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 M0QXV9 152 aa11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 TSSC4Q9Y5U2 329 aaPredicted RBP11.4□□□□□ -0.58
SMARCA4-219ENST00000592604 TMEM78Q5T7P6 136 aa11.39□□□□□ -0.59
SMARCA4-219ENST00000592604 C11orf71Q6IPW1 123 aa11.39□□□□□ -0.59
SMARCA4-219ENST00000592604 C9orf47Q6ZRZ4 202 aa11.39□□□□□ -0.59
SMARCA4-219ENST00000592604 MAPKAPK5-AS1Q8N8E1 139 aa11.39□□□□□ -0.59
SMARCA4-219ENST00000592604 RPL24P83731 157 aaKnown RBP11.39□□□□□ -0.59
SMARCA4-219ENST00000592604 NHP2Q9NX24 153 aaKnown RBP11.39□□□□□ -0.59
SMARCA4-219ENST00000592604 DCHS2Q6V1P9 2916 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 541.4 ms