RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 BEAN1Q3B7T3 259 aa16.54■□□□□ 0.24
ATG4D-209ENST00000588857 ODF3L2Q3SX64 289 aa16.54■□□□□ 0.24
ATG4D-209ENST00000588857 FAM162BQ5T6X4 162 aa16.54■□□□□ 0.24
ATG4D-209ENST00000588857 LINC00322Q6ZN03 302 aaPredicted RBP16.54■□□□□ 0.24
ATG4D-209ENST00000588857 C19orf71A6NCJ1 209 aa16.53■□□□□ 0.24
ATG4D-209ENST00000588857 KNCNA6PVL3 124 aa16.53■□□□□ 0.24
ATG4D-209ENST00000588857 GATCO43716 136 aaKnown RBP16.53■□□□□ 0.24
ATG4D-209ENST00000588857 APRG1Q8IVJ8 170 aa16.53■□□□□ 0.24
ATG4D-209ENST00000588857 IGKV3-20P01619 116 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 HLA-DRB4P13762 266 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 CRIP1P50238 77 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 FAM19A4Q96LR4 140 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 ODF3Q96PU9 254 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 TUBA4BQ9H853 241 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 V9GYV3 84 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 HLA-DRB4X5D2U9 266 aa16.52■□□□□ 0.24
ATG4D-209ENST00000588857 IGLL1P15814 213 aa16.51■□□□□ 0.23
ATG4D-209ENST00000588857 ZNF124Q15973 351 aa16.51■□□□□ 0.23
ATG4D-209ENST00000588857 FABP5P3A8MUU1 101 aa16.51■□□□□ 0.23
ATG4D-209ENST00000588857 SH2D1AO60880 128 aa16.51■□□□□ 0.23
ATG4D-209ENST00000588857 GPX1P07203 203 aa16.51■□□□□ 0.23
ATG4D-209ENST00000588857 LEPP41159 167 aa16.51■□□□□ 0.23
ATG4D-209ENST00000588857 ZNF80P51504 273 aaPredicted RBP16.51■□□□□ 0.23
ATG4D-209ENST00000588857 RPP21Q9H633 154 aaKnown RBP16.51■□□□□ 0.23
ATG4D-209ENST00000588857 H3BMM0 161 aa16.5■□□□□ 0.23
ATG4D-209ENST00000588857 J3KRW8 73 aa16.5■□□□□ 0.23
ATG4D-209ENST00000588857 CRISP2P16562 243 aa16.5■□□□□ 0.23
ATG4D-209ENST00000588857 S100PP25815 95 aa16.5■□□□□ 0.23
ATG4D-209ENST00000588857 ZFAND2AQ8N6M9 145 aa16.5■□□□□ 0.23
ATG4D-209ENST00000588857 FAM110AQ9BQ89 295 aa16.5■□□□□ 0.23
ATG4D-209ENST00000588857 URGCP-MRPS24S4R325 110 aa16.5■□□□□ 0.23
ATG4D-209ENST00000588857 PKD1L1Q8TDX9 2849 aa16.49■□□□□ 0.23
ATG4D-209ENST00000588857 CD7P09564 240 aa16.49■□□□□ 0.23
ATG4D-209ENST00000588857 TSPOP30536 169 aa16.49■□□□□ 0.23
ATG4D-209ENST00000588857 PFN1P07737 140 aaKnown RBP16.48■□□□□ 0.23
ATG4D-209ENST00000588857 KCNIP4Q6PIL6 250 aa16.48■□□□□ 0.23
ATG4D-209ENST00000588857 IMMP2LQ96T52 175 aa16.48■□□□□ 0.23
ATG4D-209ENST00000588857 IL36BQ9NZH7 164 aa16.48■□□□□ 0.23
ATG4D-209ENST00000588857 RNASE4P34096 147 aaKnown RBP16.47■□□□□ 0.23
ATG4D-209ENST00000588857 GTSCR1Q86UQ5 136 aa16.47■□□□□ 0.23
ATG4D-209ENST00000588857 OR2D3Q8NGH3 330 aa16.47■□□□□ 0.23
ATG4D-209ENST00000588857 CA1P00915 261 aaPredicted RBP16.47■□□□□ 0.23
ATG4D-209ENST00000588857 CT83Q5H943 113 aa16.47■□□□□ 0.23
ATG4D-209ENST00000588857 PRR9Q5T870 116 aa16.47■□□□□ 0.23
ATG4D-209ENST00000588857 STHQ8IWL8 128 aa16.47■□□□□ 0.23
ATG4D-209ENST00000588857 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.47■□□□□ 0.23
ATG4D-209ENST00000588857 CMYA5Q8N3K9 4069 aa16.46■□□□□ 0.23
ATG4D-209ENST00000588857 A8MTW9 85 aa16.46■□□□□ 0.23
ATG4D-209ENST00000588857 A8MWL6 223 aa16.46■□□□□ 0.23
ATG4D-209ENST00000588857 KLLNB2CW77 178 aa16.46■□□□□ 0.23
ATG4D-209ENST00000588857 WIPF1O43516 503 aa16.46■□□□□ 0.23
ATG4D-209ENST00000588857 CDKN1BP46527 198 aa16.46■□□□□ 0.23
ATG4D-209ENST00000588857 AMTNQ6UX39 209 aa16.46■□□□□ 0.23
ATG4D-209ENST00000588857 TMEM189A5PLL7 270 aa16.45■□□□□ 0.22
ATG4D-209ENST00000588857 ORM1P02763 201 aa16.45■□□□□ 0.22
ATG4D-209ENST00000588857 TRAV21A0A0B4J279 112 aa16.44■□□□□ 0.22
ATG4D-209ENST00000588857 M0R2Z0 102 aa16.44■□□□□ 0.22
ATG4D-209ENST00000588857 ELOBQ15370 118 aa16.44■□□□□ 0.22
ATG4D-209ENST00000588857 SPINK13Q1W4C9 94 aa16.44■□□□□ 0.22
ATG4D-209ENST00000588857 TSKUQ8WUA8 353 aa16.44■□□□□ 0.22
ATG4D-209ENST00000588857 CLUHP3Q96NS8 147 aa16.44■□□□□ 0.22
ATG4D-209ENST00000588857 FAM3BP58499 235 aaPredicted RBP16.43■□□□□ 0.22
ATG4D-209ENST00000588857 RPL19P84098 196 aaKnown RBP16.43■□□□□ 0.22
ATG4D-209ENST00000588857 C19orf73Q9NVV2 129 aa16.43■□□□□ 0.22
ATG4D-209ENST00000588857 SMIM27A0A1W2PRY6 76 aa16.43■□□□□ 0.22
ATG4D-209ENST00000588857 XKRY2A2RUG3 117 aa16.43■□□□□ 0.22
ATG4D-209ENST00000588857 TCL1AP56279 114 aa16.43■□□□□ 0.22
ATG4D-209ENST00000588857 KIR3DS1Q14943 382 aa16.43■□□□□ 0.22
ATG4D-209ENST00000588857 Q6AWC8 147 aa16.43■□□□□ 0.22
ATG4D-209ENST00000588857 YPEL4Q96NS1 127 aa16.43■□□□□ 0.22
ATG4D-209ENST00000588857 A0A1W2PPQ1 181 aa16.42■□□□□ 0.22
ATG4D-209ENST00000588857 C7orf71A4D174 169 aa16.42■□□□□ 0.22
ATG4D-209ENST00000588857 RBMY1BA6NDE4 496 aaKnown RBP16.42■□□□□ 0.22
ATG4D-209ENST00000588857 RBMY1EA6NEQ0 496 aaKnown RBP16.42■□□□□ 0.22
ATG4D-209ENST00000588857 RBMY1DP0C7P1 496 aaKnown RBP16.42■□□□□ 0.22
ATG4D-209ENST00000588857 RPS20P60866 119 aaKnown RBP16.42■□□□□ 0.22
ATG4D-209ENST00000588857 TRAV12-2A0A075B6T6 113 aa16.41■□□□□ 0.22
ATG4D-209ENST00000588857 TMSB15BA0A087X1C1 80 aa16.41■□□□□ 0.22
ATG4D-209ENST00000588857 COLCA2A8K830 154 aa16.41■□□□□ 0.22
ATG4D-209ENST00000588857 LINC01559Q495D7 138 aa16.41■□□□□ 0.22
ATG4D-209ENST00000588857 TRPT1Q86TN4 253 aaKnown RBP16.41■□□□□ 0.22
ATG4D-209ENST00000588857 GFRA4Q9GZZ7 299 aa16.41■□□□□ 0.22
ATG4D-209ENST00000588857 WFDC10AQ9H1F0 79 aa16.41■□□□□ 0.22
ATG4D-209ENST00000588857 TGIF2-C20orf24A0A0A6YYL0 155 aa16.4■□□□□ 0.22
ATG4D-209ENST00000588857 FXYD7P58549 80 aa16.4■□□□□ 0.22
ATG4D-209ENST00000588857 GFI1BQ5VTD9 330 aa16.4■□□□□ 0.22
ATG4D-209ENST00000588857 NEU1Q99519 415 aa16.4■□□□□ 0.22
ATG4D-209ENST00000588857 NAT8BQ9UHF3 227 aa16.4■□□□□ 0.22
ATG4D-209ENST00000588857 TRAV12-3A0A0B4J271 114 aa16.39■□□□□ 0.21
ATG4D-209ENST00000588857 FAM231BA6NCW3 169 aa16.39■□□□□ 0.21
ATG4D-209ENST00000588857 GZMBP10144 247 aa16.39■□□□□ 0.21
ATG4D-209ENST00000588857 Q6ZQT7 251 aa16.39■□□□□ 0.21
ATG4D-209ENST00000588857 BTF3L4Q96K17 158 aa16.39■□□□□ 0.21
ATG4D-209ENST00000588857 NAGKQ9UJ70 344 aa16.39■□□□□ 0.21
ATG4D-209ENST00000588857 TRBV24-1A0A075B6N3 115 aa16.38■□□□□ 0.21
ATG4D-209ENST00000588857 TRAV9-1A0A075B6T8 112 aa16.38■□□□□ 0.21
ATG4D-209ENST00000588857 HIGD1CA8MV81 97 aa16.38■□□□□ 0.21
ATG4D-209ENST00000588857 NUTF2P61970 127 aaKnown RBP16.38■□□□□ 0.21
ATG4D-209ENST00000588857 OXLD1Q5BKU9 147 aa16.38■□□□□ 0.21
ATG4D-209ENST00000588857 C11orf21Q9P2W6 132 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms