RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 TUBA4BQ9H853 241 aa7.9□□□□□ -1.14
SS18-213ENST00000579640 LOC102724200A0A096LPH7 203 aaPredicted RBP7.89□□□□□ -1.15
SS18-213ENST00000579640 SPINK13Q1W4C9 94 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 SVBPQ8N300 66 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 ZC2HC1AQ96GY0 325 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 C1QTNF4Q9BXJ3 329 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 PKD1L1Q8TDX9 2849 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 KIR2DL5BA0A0G2JN68 375 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 KIR2DL5BA0A0G2JPC4 375 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 K7EN84 100 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 ATP6V1G1O75348 118 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 APOC3P02656 99 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 IGHV4-30-4P0DP06 118 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 RPL35AP18077 110 aaKnown RBP7.89□□□□□ -1.15
SS18-213ENST00000579640 S100A1P23297 94 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 FAM162BQ5T6X4 162 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 Q6AWC8 147 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 KIR2DL5AQ8N109 375 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 KIR2DL5BQ8NHK3 375 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 ISOC2Q96AB3 205 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 C20orf144Q9BQM9 153 aa7.89□□□□□ -1.15
SS18-213ENST00000579640 AURKAIP1Q9NWT8 199 aaPredicted RBP7.89□□□□□ -1.15
SS18-213ENST00000579640 TRAV21A0A0B4J279 112 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 C7orf71A4D174 169 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 FABP5P3A8MUU1 101 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 B4DEV8 164 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 M0R2Z0 102 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 INSP01308 110 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 PFN1P07737 140 aaKnown RBP7.88□□□□□ -1.15
SS18-213ENST00000579640 APOC4P55056 127 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 GFI1BQ5VTD9 330 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 PRR27Q6MZM9 219 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 FAM231DQ6ZW35 169 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 DAZAP1Q96EP5 407 aaKnown RBP7.88□□□□□ -1.15
SS18-213ENST00000579640 CSTL1Q9H114 145 aa7.88□□□□□ -1.15
SS18-213ENST00000579640 MGAM2Q2M2H8 2515 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 J3KRW8 73 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 M0R036 132 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 SNAPINO95295 136 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 RNASE4P34096 147 aaKnown RBP7.87□□□□□ -1.15
SS18-213ENST00000579640 ZNF80P51504 273 aaPredicted RBP7.87□□□□□ -1.15
SS18-213ENST00000579640 BTN1A1Q13410 526 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 OR5I1Q13606 314 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 PRR9Q5T870 116 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 OSTCQ9NRP0 149 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 DNAH3Q8TD57 4116 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 TRAV12-2A0A075B6T6 113 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 C19orf71A6NCJ1 209 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 CRXO43186 299 aaPredicted RBP7.87□□□□□ -1.15
SS18-213ENST00000579640 SH2D1AO60880 128 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 CRIP1P50238 77 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 FXYD7P58549 80 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 ERVFC1-1P60608 527 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 IBA57Q5T440 356 aaKnown RBP7.87□□□□□ -1.15
SS18-213ENST00000579640 LINC00322Q6ZN03 302 aaPredicted RBP7.87□□□□□ -1.15
SS18-213ENST00000579640 C15orf54Q8N8G6 183 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 CLRN3Q8NCR9 226 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 SFRP2Q96HF1 295 aa7.87□□□□□ -1.15
SS18-213ENST00000579640 UBE2CO00762 179 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 PPP1R2P9O14990 202 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 CA1P00915 261 aaPredicted RBP7.86□□□□□ -1.15
SS18-213ENST00000579640 P01737 135 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 MT-ND4LP03901 98 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 KIR3DS1Q14943 382 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 RHEBQ15382 184 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 ANAPC16Q96DE5 110 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 XCL2Q9UBD3 114 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 DNHD1Q96M86 4753 aa7.86□□□□□ -1.15
SS18-213ENST00000579640 TRAV12-3A0A0B4J271 114 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 ZNF324O75467 553 aaPredicted RBP7.85□□□□□ -1.15
SS18-213ENST00000579640 GIG44P09565 113 aaPredicted RBP7.85□□□□□ -1.15
SS18-213ENST00000579640 TMEM256Q8N2U0 113 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 NUDT10Q8NFP7 164 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 OR10G8Q8NGN5 311 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 NUDT11Q96G61 164 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 RNASE7Q9H1E1 156 aaKnown RBP7.85□□□□□ -1.15
SS18-213ENST00000579640 GATCO43716 136 aaKnown RBP7.85□□□□□ -1.15
SS18-213ENST00000579640 LINC01559Q495D7 138 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 CT83Q5H943 113 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 CTDSP1Q9GZU7 261 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 GOLT1BQ9Y3E0 138 aa7.85□□□□□ -1.15
SS18-213ENST00000579640 ZNF705GA8MUZ8 300 aaPredicted RBP7.84□□□□□ -1.15
SS18-213ENST00000579640 H7BYZ3 331 aa7.84□□□□□ -1.15
SS18-213ENST00000579640 K7EIL1 84 aa7.84□□□□□ -1.15
SS18-213ENST00000579640 ORM1P02763 201 aa7.84□□□□□ -1.15
SS18-213ENST00000579640 RPS20P60866 119 aaKnown RBP7.84□□□□□ -1.15
SS18-213ENST00000579640 RNF212Q495C1 297 aa7.84□□□□□ -1.15
SS18-213ENST00000579640 KCNS1Q96KK3 526 aa7.84□□□□□ -1.15
SS18-213ENST00000579640 PYGO2Q9BRQ0 406 aa7.84□□□□□ -1.15
SS18-213ENST00000579640 LINC00467Q9BRT7 94 aa7.84□□□□□ -1.15
SS18-213ENST00000579640 RPP21Q9H633 154 aaKnown RBP7.84□□□□□ -1.15
SS18-213ENST00000579640 IGHV1OR15-1A0A075B7D0 117 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 A0A087WWC5 75 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 XKRY2A2RUG3 117 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 C7orf77A4D0Y5 90 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 TMEM189A5PLL7 270 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 CXCL1P09341 107 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 TDRG1Q3Y452 100 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 FAM159AQ6UWV7 190 aa7.83□□□□□ -1.16
SS18-213ENST00000579640 CSNK1G2-AS1Q8NCQ2 148 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms