RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 IGKV1-9A0A0C4DH69 117 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 TRBV7-6A0A0J9YX20 115 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 LY6LH3BQJ8 138 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 RPL36A-HNRNPH2H7BZ11 118 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 M0R135 149 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 M0R1X1 148 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 MRPL33O75394 65 aaKnown RBP2.85□□□□□ -1.95
NUP88-213ENST00000576862 UBL3O95164 117 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 IGLV3-1P01715 115 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 CD2P06729 351 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 PTHLHP12272 177 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 PSMB8P28062 276 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 CA7P43166 264 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 UBE2AP49459 152 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 DEFA1P59665 94 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 DEFA3P59666 94 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 MEF2BQ02080 365 aaPredicted RBP2.85□□□□□ -1.95
NUP88-213ENST00000576862 RBMY1FQ15415 496 aaKnown RBP2.85□□□□□ -1.95
NUP88-213ENST00000576862 MSMO1Q15800 293 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 TMEM244Q5VVB8 128 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 ZNF880Q6PDB4 577 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 UNQ9165/PRO28630Q6UXU0 137 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 GTF2H5Q6ZYL4 71 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 PRNTQ86SH4 94 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 WDR86Q86TI4 376 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 LINC00596Q86U02 117 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 C1orf174Q8IYL3 243 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 OR5AS1Q8N127 324 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 MRPL30Q8TCC3 161 aaKnown RBP2.85□□□□□ -1.95
NUP88-213ENST00000576862 SMIM4Q8WVI0 70 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 TOMM6Q96B49 74 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 AP1S3Q96PC3 154 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 MED9Q9NWA0 146 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 CKLFQ9UBR5 152 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 SPTA1P02549 2419 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 CNTRLQ7Z7A1 2325 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 HEATR5AQ86XA9 2040 aa2.85□□□□□ -1.95
NUP88-213ENST00000576862 AKAP13Q12802 2813 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 TLN1Q9Y490 2541 aaKnown RBP2.84□□□□□ -1.95
NUP88-213ENST00000576862 TRAV9-1A0A075B6T8 112 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 A0A1B0GW54 56 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 C9JQL5 133 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 M0R381 172 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 LYRM1O43325 122 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 LYZL6O75951 148 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 KRASP01116 189 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 IL3RAP26951 378 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 PCBD1P61457 104 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 RPL23P62829 140 aaKnown RBP2.84□□□□□ -1.95
NUP88-213ENST00000576862 QRFPP83859 136 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 HSD52Q0P140 79 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 VMA21Q3ZAQ7 101 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 Q6ZS92 163 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 KTN1-AS1Q86SY8 53 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 C15orf56Q8N910 161 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 C15orf40Q8WUR7 153 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 SPTSSAQ969W0 71 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 BORCS8Q96FH0 119 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 SPIN2AQ99865 258 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 SPIN2BQ9BPZ2 258 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 C1QTNF6Q9BXI9 259 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 WDR61Q9GZS3 305 aaKnown RBP2.84□□□□□ -1.95
NUP88-213ENST00000576862 TUBA4BQ9H853 241 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 PLEKHF2Q9H8W4 249 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 TAS2R8Q9NYW2 309 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 MPC1Q9Y5U8 109 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 NINQ8N4C6 2090 aa2.84□□□□□ -1.95
NUP88-213ENST00000576862 PCNX2A6NKB5 2137 aa2.84□□□□□ -1.96
NUP88-213ENST00000576862 CHD8Q9HCK8 2581 aa2.84□□□□□ -1.96
NUP88-213ENST00000576862 CFAP54Q96N23 3096 aa2.84□□□□□ -1.96
NUP88-213ENST00000576862 CCDC88CQ9P219 2028 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 TRBV20OR9-2A0A075B6H5 130 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 LOC107984640A0A0U1RRK4 108 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 A8MUN3 132 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 ZNF705GA8MUZ8 300 aaPredicted RBP2.83□□□□□ -1.96
NUP88-213ENST00000576862 TMEM14DPA8MWL7 114 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 LST1O00453 97 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 UBE2L6O14933 153 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 TRGC2P03986 189 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 ZNF93P35789 620 aaPredicted RBP2.83□□□□□ -1.96
NUP88-213ENST00000576862 LINC00313P59037 77 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 RRN3P1Q2M238 152 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 ORMDL2Q53FV1 153 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 IGFL1Q6UW32 110 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 MDP1Q86V88 176 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 RPRMLQ8N4K4 120 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 ZNF709Q8N972 641 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 OR5D14Q8NGL3 314 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 S100A16Q96FQ6 103 aaKnown RBP2.83□□□□□ -1.96
NUP88-213ENST00000576862 MRPL32Q9BYC8 188 aaKnown RBP2.83□□□□□ -1.96
NUP88-213ENST00000576862 ATG5Q9H1Y0 275 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 C11orf68Q9H3H3 251 aaKnown RBP2.83□□□□□ -1.96
NUP88-213ENST00000576862 RPRMQ9NS64 109 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 FAM215AQ9Y5M1 114 aa2.83□□□□□ -1.96
NUP88-213ENST00000576862 URB1O60287 2271 aaKnown RBP2.82□□□□□ -1.96
NUP88-213ENST00000576862 FREM2Q5SZK8 3169 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 TMEM235A6NFC5 223 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 DPRXA6NFQ7 191 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 C1orf196B1AJZ1 125 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 B4DEV8 164 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms