RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CRISP2P16562 243 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 RNASE4P34096 147 aaKnown RBP7.03□□□□□ -1.28
CUX1-216ENST00000558469 GNG4P50150 75 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 CENPWQ5EE01 88 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 UQCC3Q6UW78 93 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 BAGE2Q86Y30 109 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 KIR2DL5AQ8N109 375 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 ZFAND2AQ8N6M9 145 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 KIR2DL5BQ8NHK3 375 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 IGF2BP2-AS1Q96M15 143 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 SMIM7Q9BQ49 75 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 ZFP30Q9Y2G7 519 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 TRBV20OR9-2A0A075B6H5 130 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 TRAV12-3A0A0B4J271 114 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 PGPEP1LA6NFU8 196 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 ZNF727A8MUV8 499 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 KLLNB2CW77 178 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 CRXO43186 299 aaPredicted RBP7.02□□□□□ -1.29
CUX1-216ENST00000558469 AMBPP02760 352 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 BTN1A1Q13410 526 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 SMUG1Q53HV7 270 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 SOHLH1Q5JUK2 328 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 PRR9Q5T870 116 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 GFI1BQ5VTD9 330 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 TMEM183AQ8IXX5 376 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 EIF4E3Q8N5X7 224 aaKnown RBP7.02□□□□□ -1.29
CUX1-216ENST00000558469 ZC2HC1AQ96GY0 325 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 C1QTNF4Q9BXJ3 329 aa7.02□□□□□ -1.29
CUX1-216ENST00000558469 MEGF8Q7Z7M0 2845 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 NBEAL2Q6ZNJ1 2754 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 C7orf71A4D174 169 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 C9JCJ5 164 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 UBE2CO00762 179 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 GCGP01275 180 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 INSP01308 110 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 IGLV2-8P01709 118 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 MGST1P10620 155 aaKnown RBP7.01□□□□□ -1.29
CUX1-216ENST00000558469 ZNF80P51504 273 aaPredicted RBP7.01□□□□□ -1.29
CUX1-216ENST00000558469 FAM74A3Q4VXF1 159 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 Q6ZQT7 251 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 SLC7A5P1Q8MH63 180 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 CSNK1G2-AS1Q8NCQ2 148 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 OCC1Q8TAD7 63 aa7.01□□□□□ -1.29
CUX1-216ENST00000558469 IGHV3OR16-12A0A075B7B8 117 aa7□□□□□ -1.29
CUX1-216ENST00000558469 RBMY1A1P0DJD3 496 aaKnown RBP7□□□□□ -1.29
CUX1-216ENST00000558469 RBMY1CP0DJD4 496 aa7□□□□□ -1.29
CUX1-216ENST00000558469 RBMY1FQ15415 496 aaKnown RBP7□□□□□ -1.29
CUX1-216ENST00000558469 NDUFA5Q16718 116 aa7□□□□□ -1.29
CUX1-216ENST00000558469 TMEM241Q24JQ0 296 aa7□□□□□ -1.29
CUX1-216ENST00000558469 DEFB135Q30KP9 77 aa7□□□□□ -1.29
CUX1-216ENST00000558469 Q6AWC8 147 aa7□□□□□ -1.29
CUX1-216ENST00000558469 PRR27Q6MZM9 219 aa7□□□□□ -1.29
CUX1-216ENST00000558469 COX8CQ7Z4L0 72 aa7□□□□□ -1.29
CUX1-216ENST00000558469 SBSPONQ8IVN8 264 aa7□□□□□ -1.29
CUX1-216ENST00000558469 NIPSNAP3BQ9BS92 247 aa7□□□□□ -1.29
CUX1-216ENST00000558469 TMEM208Q9BTX3 173 aa7□□□□□ -1.29
CUX1-216ENST00000558469 MLST8Q9BVC4 326 aa7□□□□□ -1.29
CUX1-216ENST00000558469 TMEM218A2RU14 115 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 FABP5P3A8MUU1 101 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 F8W036 122 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 K7EN84 100 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 ZNF324O75467 553 aaPredicted RBP6.99□□□□□ -1.29
CUX1-216ENST00000558469 PFN1P07737 140 aaKnown RBP6.99□□□□□ -1.29
CUX1-216ENST00000558469 HTN1P15515 57 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 CRIP1P50238 77 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 FAM162BQ5T6X4 162 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 Q6ZWC4 215 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 C1orf158Q8N1D5 194 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 SMIM12Q96EX1 92 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 LINC01587Q99440 93 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 NAT8Q9UHE5 227 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 GOLT1BQ9Y3E0 138 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 LY96Q9Y6Y9 160 aa6.99□□□□□ -1.29
CUX1-216ENST00000558469 TRAV21A0A0B4J279 112 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 SPRY2O43597 315 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 SH2D1AO60880 128 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 OR5I1Q13606 314 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 MUC21Q5SSG8 566 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 TMEM256Q8N2U0 113 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 RNF183Q96D59 192 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 RCHY1Q96PM5 261 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 C20orf144Q9BQM9 153 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 SDF2L1Q9HCN8 221 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 RETNQ9HD89 108 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 BIN3Q9NQY0 253 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 NAGKQ9UJ70 344 aa6.98□□□□□ -1.29
CUX1-216ENST00000558469 H7BYZ3 331 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 ORM1P02763 201 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 PRM2P04554 102 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 ADCYAP1P18509 176 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 RPL23P62829 140 aaKnown RBP6.97□□□□□ -1.29
CUX1-216ENST00000558469 ADIRFQ15847 76 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 FAM159AQ6UWV7 190 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 ZNF705AQ6ZN79 300 aaPredicted RBP6.97□□□□□ -1.29
CUX1-216ENST00000558469 LINC01551Q86U37 167 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 DAZAP1Q96EP5 407 aaKnown RBP6.97□□□□□ -1.29
CUX1-216ENST00000558469 B9D2Q9BPU9 175 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 SEC11CQ9BY50 192 aa6.97□□□□□ -1.29
CUX1-216ENST00000558469 RNASE7Q9H1E1 156 aaKnown RBP6.97□□□□□ -1.29
CUX1-216ENST00000558469 C11orf21Q9P2W6 132 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms