RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CXCL16Q9H2A7 254 aa3.91□□□□□ -1.78
VPS29-210ENST00000552130 DPH3P1Q9H4G8 78 aa3.91□□□□□ -1.78
VPS29-210ENST00000552130 LCTP09848 1927 aa3.91□□□□□ -1.78
VPS29-210ENST00000552130 MALRD1Q5VYJ5 2156 aa3.9□□□□□ -1.78
VPS29-210ENST00000552130 SPHKAPQ2M3C7 1700 aa3.9□□□□□ -1.78
VPS29-210ENST00000552130 PROSCO94903 275 aa3.9□□□□□ -1.79
VPS29-210ENST00000552130 PEA15Q15121 130 aa3.9□□□□□ -1.79
VPS29-210ENST00000552130 FAM19A2Q8N3H0 131 aa3.9□□□□□ -1.79
VPS29-210ENST00000552130 LINC00301Q8NCQ3 95 aa3.9□□□□□ -1.79
VPS29-210ENST00000552130 SMIM7Q9BQ49 75 aa3.9□□□□□ -1.79
VPS29-210ENST00000552130 C14orf132Q9NPU4 83 aa3.9□□□□□ -1.79
VPS29-210ENST00000552130 MCM3APO60318 1980 aa3.9□□□□□ -1.79
VPS29-210ENST00000552130 IGKV1D-42A0A075B6H8 117 aa3.89□□□□□ -1.79
VPS29-210ENST00000552130 IGKV3D-15A0A087WSY6 115 aa3.89□□□□□ -1.79
VPS29-210ENST00000552130 PIPP12273 146 aaPredicted RBP3.89□□□□□ -1.79
VPS29-210ENST00000552130 EIF4EBP1Q13541 118 aaPredicted RBP3.89□□□□□ -1.79
VPS29-210ENST00000552130 IQCJQ1A5X6 159 aa3.89□□□□□ -1.79
VPS29-210ENST00000552130 SPRNQ5BIV9 151 aa3.89□□□□□ -1.79
VPS29-210ENST00000552130 SBSPONQ8IVN8 264 aa3.89□□□□□ -1.79
VPS29-210ENST00000552130 TRAV14DV4A0A0A6YYC5 116 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 PIRTP0C851 137 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 C5orf38Q86SI9 138 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 LINC00612Q8N6U2 182 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 Q8N8P6 123 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 C10orf82Q8WW14 230 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 S4R3C0 116 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 MEGF6O75095 1541 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 CHD3Q12873 2000 aaKnown RBP3.88□□□□□ -1.79
VPS29-210ENST00000552130 SCN3AQ9NY46 2000 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 PLXNA3P51805 1871 aa3.88□□□□□ -1.79
VPS29-210ENST00000552130 IGHV3-64A0A075B6Q5 118 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 IGHV3OR16-8A0A075B7F1 116 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 TRAV1-1A0A0B4J248 108 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 UBE2L5PA0A1B0GUS4 154 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 A0A1B0GVY2 172 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 GNGT2O14610 69 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 MRPS14O60783 128 aaKnown RBP3.87□□□□□ -1.79
VPS29-210ENST00000552130 ATP5EP56381 51 aaPredicted RBP3.87□□□□□ -1.79
VPS29-210ENST00000552130 UBE2L3P68036 154 aaKnown RBP3.87□□□□□ -1.79
VPS29-210ENST00000552130 KRTAP25-1Q3LHN0 102 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 SPANXN5Q5MJ07 72 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 UNQ5815/PRO19632Q6UWF5 114 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 SLC25A26Q70HW3 274 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 ZNF720Q7Z2F6 126 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 LINC00269Q8N2A0 174 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 MAPK1IP1LQ8NDC0 245 aa3.87□□□□□ -1.79
VPS29-210ENST00000552130 GAPVD1Q14C86 1478 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 PLEKHH2Q8IVE3 1493 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 TNRC6AQ8NDV7 1962 aaKnown RBP3.86□□□□□ -1.79
VPS29-210ENST00000552130 C5orf67F2Z3F1 127 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 K7EP34 96 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 INSL4Q14641 139 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 ZNF79Q15937 498 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 MUCL1Q96DR8 90 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 LINC00052Q96N35 136 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 C20orf166-AS1Q96NR2 134 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 NACAE9PAV3 2078 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 WDR90Q96KV7 1748 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 ABCC5O15440 1437 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 CCDC141Q6ZP82 1450 aa3.86□□□□□ -1.79
VPS29-210ENST00000552130 SCAF11Q99590 1463 aaKnown RBP3.86□□□□□ -1.79
VPS29-210ENST00000552130 UBL3O95164 117 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 BAALC-AS2P0C853 105 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 ASIPP42127 132 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 KRTAP10-3P60369 221 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 RPL26P61254 145 aaKnown RBP3.85□□□□□ -1.79
VPS29-210ENST00000552130 ZNF345Q14585 488 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 ZNF826PQ6ZT77 177 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 KRTAP5-2Q701N4 177 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 ARPINQ7Z6K5 226 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 S100A13Q99584 98 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 C10orf71Q711Q0 1435 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 UACAQ9BZF9 1416 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 ABCC3O15438 1527 aa3.85□□□□□ -1.79
VPS29-210ENST00000552130 GYPAP02724 150 aa3.84□□□□□ -1.79
VPS29-210ENST00000552130 DSCR4P56555 118 aaPredicted RBP3.84□□□□□ -1.79
VPS29-210ENST00000552130 KPRPQ5T749 579 aaPredicted RBP3.84□□□□□ -1.79
VPS29-210ENST00000552130 SPANXN1Q5VSR9 72 aa3.84□□□□□ -1.79
VPS29-210ENST00000552130 DYNLRB2Q8TF09 96 aa3.84□□□□□ -1.79
VPS29-210ENST00000552130 GFRA4Q9GZZ7 299 aa3.84□□□□□ -1.79
VPS29-210ENST00000552130 MUC4Q99102 2169 aa3.84□□□□□ -1.79
VPS29-210ENST00000552130 CASKIN1Q8WXD9 1431 aa3.84□□□□□ -1.79
VPS29-210ENST00000552130 SNRNP200O75643 2136 aaKnown RBP3.83□□□□□ -1.8
VPS29-210ENST00000552130 A0A0J9YX75 114 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 E7EUB6 86 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 F8W1H4 67 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 NMBP08949 121 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 TRAPPC2P0DI81 140 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 TRAPPC2BP0DI82 140 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 SSR2P43308 183 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 RBM3P98179 157 aaKnown RBP3.83□□□□□ -1.8
VPS29-210ENST00000552130 TDRG1Q3Y452 100 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 CASC2Q6XLA1 102 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 HMGN2P46Q86SG4 172 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 CC2D2AQ9P2K1 1620 aa3.83□□□□□ -1.8
VPS29-210ENST00000552130 KIAA1549Q9HCM3 1950 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 ROBO1Q9Y6N7 1651 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 MAGI2Q86UL8 1455 aa3.82□□□□□ -1.8
VPS29-210ENST00000552130 IGLV10-54A0A075B6I4 117 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms