RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 Q96MF0 132 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 MRPL27Q9P0M9 148 aaKnown RBP11.78□□□□□ -0.52
CUX1-214ENST00000550008 TRAV26-2A0A0B4J265 109 aa11.77□□□□□ -0.52
CUX1-214ENST00000550008 LGALS3P17931 250 aaKnown RBP11.77□□□□□ -0.52
CUX1-214ENST00000550008 STPG4Q8N801 248 aa11.77□□□□□ -0.52
CUX1-214ENST00000550008 ZNF418Q8TF45 676 aaPredicted RBP11.77□□□□□ -0.52
CUX1-214ENST00000550008 ZNF503Q96F45 646 aa11.77□□□□□ -0.52
CUX1-214ENST00000550008 ST20Q9HBF5 79 aa11.77□□□□□ -0.52
CUX1-214ENST00000550008 SPCS1Q9Y6A9 102 aa11.77□□□□□ -0.52
CUX1-214ENST00000550008 FAM223BA6NKX1 122 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 H3BUT2 72 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 GP9P14770 177 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 SLC25A16P16260 332 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 FAM231DQ6ZW35 169 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 FAM223AQ8IWN6 122 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 TMEM158Q8WZ71 300 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 ZNF492Q9P255 531 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 PYGO2Q9BRQ0 406 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 CPAMD8Q8IZJ3 1885 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 IGHV3-64A0A075B6Q5 118 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 TRAV12-2A0A075B6T6 113 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 SRSF1Q07955 248 aaKnown RBP eCLIP11.77□□□□□ -0.53
CUX1-214ENST00000550008 SPINK13Q1W4C9 94 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 DYNAPQ8N1N2 210 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 GEMIN7Q9H840 131 aaKnown RBP11.77□□□□□ -0.53
CUX1-214ENST00000550008 PEMTQ9UBM1 199 aa11.77□□□□□ -0.53
CUX1-214ENST00000550008 EXPH5Q8NEV8 1989 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 UBE2E2Q96LR5 201 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 TMEM14CQ9P0S9 112 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 DEFB1P60022 68 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 MPV17L2Q567V2 206 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 C1orf122Q6ZSJ8 110 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 Q8N9W7 124 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 DSCAML1Q8TD84 2053 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 APOMO95445 188 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 CTSGP08311 255 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 CD300EQ496F6 205 aaPredicted RBP11.76□□□□□ -0.53
CUX1-214ENST00000550008 STHQ8IWL8 128 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 TTC9CQ8N5M4 171 aa11.76□□□□□ -0.53
CUX1-214ENST00000550008 KNCNA6PVL3 124 aa11.75□□□□□ -0.53
CUX1-214ENST00000550008 CRXO43186 299 aaPredicted RBP11.75□□□□□ -0.53
CUX1-214ENST00000550008 DEFB131AP59861 70 aa11.75□□□□□ -0.53
CUX1-214ENST00000550008 DEFB112Q30KQ8 113 aa11.75□□□□□ -0.53
CUX1-214ENST00000550008 TEX29Q8N6K0 151 aa11.75□□□□□ -0.53
CUX1-214ENST00000550008 LINC00477Q96M19 166 aa11.75□□□□□ -0.53
CUX1-214ENST00000550008 Q71RC1 249 aaPredicted RBP11.75□□□□□ -0.53
CUX1-214ENST00000550008 TRGV2A0A075B6R0 118 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 IGKV1D-37A0A075B6S9 117 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 IGLV11-55A0A075B6I3 123 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 CENPEQ02224 2701 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 ATG2AQ2TAZ0 1938 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 NHP2Q9NX24 153 aaKnown RBP11.74□□□□□ -0.53
CUX1-214ENST00000550008 LINC01548A6NM66 108 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 UBE2L6O14933 153 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 TNFRSF6BO95407 300 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 FAM104BQ5XKR9 115 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 KLK9Q9UKQ9 250 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 DPM2O94777 84 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 LTAP01374 205 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 SUMO2P61956 95 aaKnown RBP11.74□□□□□ -0.53
CUX1-214ENST00000550008 AGPAT4-IT1Q9H0P7 198 aa11.74□□□□□ -0.53
CUX1-214ENST00000550008 TMEM8BA6NDV4 472 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 IGHV3-53P01767 116 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 EGR2P11161 476 aaPredicted RBP11.73□□□□□ -0.53
CUX1-214ENST00000550008 TDRG1Q3Y452 100 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 MRPL51Q4U2R6 128 aaKnown RBP11.73□□□□□ -0.53
CUX1-214ENST00000550008 DUSP14O95147 198 aaKnown RBP11.73□□□□□ -0.53
CUX1-214ENST00000550008 FOXE3Q13461 319 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 FBXL19-AS1Q494R0 122 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 C19orf54Q5BKX5 351 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 ORAOV1Q8WV07 137 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 GFRA4Q9GZZ7 299 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 CYSLTR1Q9Y271 337 aa11.73□□□□□ -0.53
CUX1-214ENST00000550008 H7C1H1 209 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 DEFB136Q30KP8 78 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 NEGR1Q7Z3B1 354 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 SAP30O75446 220 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 PPP1R17O96001 155 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 SMIM13P0DJ93 91 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 LAGE3Q14657 143 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 CT83Q5H943 113 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 ZC2HC1BQ5TFG8 222 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 SIGMAR1Q99720 223 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 MSRB1Q9NZV6 116 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 DOPEY1Q5JWR5 2465 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 PRSS46E5RG02 174 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 HTN3P15516 51 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 TTC32Q5I0X7 151 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 NPYP01303 97 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 ZNF876PQ49A33 203 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 OR2K2Q8NGT1 345 aa11.72□□□□□ -0.53
CUX1-214ENST00000550008 SPEGQ15772 3267 aa11.71□□□□□ -0.53
CUX1-214ENST00000550008 A0A0U1RRA0 63 aa11.71□□□□□ -0.53
CUX1-214ENST00000550008 PRAC2D3DTV9 90 aa11.71□□□□□ -0.53
CUX1-214ENST00000550008 IGKCP01834 107 aa11.71□□□□□ -0.53
CUX1-214ENST00000550008 FANCD2OSQ96PS1 177 aa11.71□□□□□ -0.53
CUX1-214ENST00000550008 IGHV1-24A0A0C4DH33 117 aa11.71□□□□□ -0.53
CUX1-214ENST00000550008 A0A1B0GWB2 263 aa11.71□□□□□ -0.53
CUX1-214ENST00000550008 GATA1P15976 413 aaPredicted RBP11.71□□□□□ -0.53
CUX1-214ENST00000550008 CSTL1Q9H114 145 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms