RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	HS3ST2	Q9Y278	367 aa		0.64	□□□□□ -2.31
PRKDC-210	ENST00000541488	ROCK2	O75116	1388 aa	Known RBP	0.64	□□□□□ -2.31
PRKDC-210	ENST00000541488	KMT2D	O14686	5537 aa		0.64	□□□□□ -2.31
PRKDC-210	ENST00000541488	ARFGEF3	Q5TH69	2177 aa		0.64	□□□□□ -2.31
PRKDC-210	ENST00000541488	ALPK2	Q86TB3	2170 aa		0.64	□□□□□ -2.31
PRKDC-210	ENST00000541488	MED12	Q93074	2177 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	TRAV9-1	A0A075B6T8	112 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	EXOC1L	A0A1B0GW35	172 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	CLDN24	A6NM45	220 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	GEMIN2	O14893	280 aa	Known RBP	0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	CHP2	O43745	196 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	OR2B3	O76000	313 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	TTR	P02766	147 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	KRTAP2-3	P0C7H8	128 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	CCL4	P13236	92 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	EIF3I	Q13347	325 aa	Known RBP	0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	KCNJ8	Q15842	424 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488		Q6ZQT0	140 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	OR6V1	Q8N148	313 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	ANKRD29	Q8N6D5	301 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	CLDN22	Q8N7P3	220 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	C15orf53	Q8NAA6	179 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	OR4E2	Q8NGC2	313 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	AQP3	Q92482	292 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	H1FX	Q92522	213 aa	Known RBP	0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	PPP1R2P1	Q96PQ5	205 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	KRTAP2-4	Q9BYR9	128 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	C11orf68	Q9H3H3	251 aa	Known RBP	0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	SLC39A9	Q9NUM3	307 aa		0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	MRPL27	Q9P0M9	148 aa	Known RBP	0.63	□□□□□ -2.31
PRKDC-210	ENST00000541488	AHNAK	Q09666	5890 aa	Known RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488		A0A087WX48	190 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	TGIF2-C20orf24	A0A0A6YYL0	155 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	TRAV26-2	A0A0B4J265	109 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	KPNA3	O00505	521 aa	Predicted RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	FAAH	O00519	579 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	PIR	O00625	290 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	RPP14	O95059	124 aa	Known RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	CRYZL1	O95825	349 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	CTSD	P07339	412 aa	Predicted RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	RBP1	P09455	135 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	BAALC-AS2	P0C853	105 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	MIF	P14174	115 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	BRS3	P32247	399 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	SRP14	P37108	136 aa	Known RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	RHEB	Q15382	184 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	IAH1	Q2TAA2	248 aa	Predicted RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	DEFB133	Q30KQ1	61 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	KHDC3L	Q587J8	217 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	TRAPPC6B	Q86SZ2	158 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	BPIFA4P	Q86YQ2	179 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	TRAPPC5	Q8IUR0	188 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	HIST3H2BB	Q8N257	126 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	SIGLECL1	Q8N7X8	197 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	OR8J2	Q8NGG1	315 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	BORCS7	Q96B45	105 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	CCDC42	Q96M95	316 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	ODF3	Q96PU9	254 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	CMSS1	Q9BQ75	279 aa	Known RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	SLC50A1	Q9BRV3	221 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	ULBP3	Q9BZM4	244 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	NHP2	Q9NX24	153 aa	Known RBP	0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	TP73-AS1	Q9UF72	201 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	ERGIC3	Q9Y282	383 aa		0.62	□□□□□ -2.31
PRKDC-210	ENST00000541488	IGKV1D-42	A0A075B6H8	117 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	OR4C46	A6NHA9	309 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488		J3QRK9	145 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	FADS1	O60427	444 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	APOD	P05090	189 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	ASAH2B	P0C7U1	165 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	S100A4	P26447	101 aa	Known RBP	0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	FKBP2	P26885	142 aa	Known RBP	0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	ARPP19	P56211	112 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	CDC42	P60953	191 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	CCL7	P80098	99 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	PDE6H	Q13956	83 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	EDDM3A	Q14507	147 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	CLVS1	Q8IUQ0	354 aa	Predicted RBP	0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	KRT222	Q8N1A0	295 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	DNAJC9	Q8WXX5	260 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	LINC00526	Q96FQ7	95 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	C8orf76	Q96K31	380 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	C2orf50	Q96LR7	162 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	TMEM147	Q9BVK8	224 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	TAS2R4	Q9NYW5	299 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	PKIG	Q9Y2B9	76 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	DNAH17	Q9UFH2	4485 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	DOCK11	Q5JSL3	2073 aa		0.61	□□□□□ -2.31
PRKDC-210	ENST00000541488	TNXB	P22105	4242 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	DNAJC13	O75165	2243 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	DOCK4	Q8N1I0	1966 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	LOC110117498	A0A087WWA1	95 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488		A0A096LNT2	108 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	BUB1B-PAK6	H3BSN5	160 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	OR2T1	O43869	369 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	OR1I1	O60431	355 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	HYPM	O75409	117 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	CRYGA	P11844	174 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	SPI1	P17947	270 aa		0.6	□□□□□ -2.31
PRKDC-210	ENST00000541488	AP3S2	P59780	193 aa		0.6	□□□□□ -2.31

Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms