RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 IGHV3-16A0A0C4DH30 117 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 C5orf63A6NC05 138 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 IGHV2-5P01817 119 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 LINC00205P59089 165 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 HLA-DRB4P13762 266 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 HLA-DRB4X5D2U9 266 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 PLCE1Q9P212 2302 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 LGALS9BQ3B8N2 356 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 LGALS9CQ6DKI2 356 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 C5orf24Q7Z6I8 188 aa8.54□□□□□ -1.04
CLIP1-209ENST00000537178 TSSC4Q9Y5U2 329 aaPredicted RBP8.54□□□□□ -1.04
CLIP1-209ENST00000537178 PCNX1Q96RV3 2341 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 TRACP01848 142 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 CGB7P0DN87 165 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 HEATR5AQ86XA9 2040 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 SHANK1Q9Y566 2161 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 CDKN1BP46527 198 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 FOXL2NBQ6ZUU3 175 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 GAGE7O76087 117 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 GAGE12FP0CL80 117 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 GAGE12GP0CL81 117 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 GAGE12IP0CL82 117 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 SRSF2Q01130 221 aaKnown RBP8.53□□□□□ -1.04
CLIP1-209ENST00000537178 CFHR3Q02985 330 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 C10orf91Q5T1B1 145 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 FAM231DQ6ZW35 169 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 CITED1Q99966 193 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 SMIM2Q9BVW6 85 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 TMEM14BQ9NUH8 114 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 CGB3P0DN86 165 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 IGLC2P0DOY2 106 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 IGLC3P0DOY3 106 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 APOC4P55056 127 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 TMEM258P61165 79 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 GAGE6Q13070 117 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 VWC2Q2TAL6 325 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 KLK9Q9UKQ9 250 aa8.53□□□□□ -1.04
CLIP1-209ENST00000537178 F8VRH5 84 aa8.52□□□□□ -1.04
CLIP1-209ENST00000537178 LY6HO94772 140 aa8.52□□□□□ -1.04
CLIP1-209ENST00000537178 IFITM1P13164 125 aa8.52□□□□□ -1.04
CLIP1-209ENST00000537178 PRR25Q96S07 402 aa8.52□□□□□ -1.04
CLIP1-209ENST00000537178 NDUFA4L2Q9NRX3 87 aa8.52□□□□□ -1.04
CLIP1-209ENST00000537178 PRSS29PA6NIE9 313 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 IGHG4P01861 327 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 HERVK_113P63121 156 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 MRPL51Q4U2R6 128 aaKnown RBP8.52□□□□□ -1.05
CLIP1-209ENST00000537178 SPANXCQ9NY87 97 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 C2orf16Q68DN1 1984 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 E7EQL1 145 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 NDUFA4O00483 81 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 Q0VFX4 171 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 UNQ6494/PRO21346Q6UXR6 183 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 MRAPQ8TCY5 172 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 NCOR1P1Q9H4R4 102 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 MED13LQ71F56 2210 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 IGHV1-69DA0A0B4J2H0 117 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 IGHV1-69P01742 117 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 COX8AP10176 69 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 PAX9P55771 341 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 TRIOO75962 3097 aa8.52□□□□□ -1.05
CLIP1-209ENST00000537178 PRSS57Q6UWY2 283 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 C8orf86Q6ZUL3 223 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 CARD19Q96LW7 228 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 hADV29S1A0JD25 119 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 B3GALT5-AS1P59052 145 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 RNF144BQ7Z419 303 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 C8orf49Q96NF6 230 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 COL5A1P20908 1838 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-209ENST00000537178 K7EP13 123 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 ANXA2RQ3ZCQ2 193 aa8.51□□□□□ -1.05
CLIP1-209ENST00000537178 MRPL35Q9NZE8 188 aaKnown RBP8.51□□□□□ -1.05
CLIP1-209ENST00000537178 TRAV12-1A0A0B4J245 112 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 RNF223E7ERA6 249 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 K7EP34 96 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 LMO1P25800 156 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 HLA-DMBP28068 263 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 J3QQQ9 107 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 LYPD6Q86Y78 171 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 TMEM14CQ9P0S9 112 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 LHBP01229 141 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 PYGO2Q9BRQ0 406 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 RBM3P98179 157 aaKnown RBP8.5□□□□□ -1.05
CLIP1-209ENST00000537178 ANKRD29Q8N6D5 301 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 ZNF581Q9P0T4 197 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 TMEM131Q92545 1883 aa8.5□□□□□ -1.05
CLIP1-209ENST00000537178 RUSC1-AS1Q66K80 236 aa8.49□□□□□ -1.05
CLIP1-209ENST00000537178 C20orf78Q9BR46 151 aa8.49□□□□□ -1.05
CLIP1-209ENST00000537178 G3V318 75 aa8.49□□□□□ -1.05
CLIP1-209ENST00000537178 ANGP03950 147 aaKnown RBP8.49□□□□□ -1.05
CLIP1-209ENST00000537178 IGHV3-38A0A0C4DH36 116 aa8.49□□□□□ -1.05
CLIP1-209ENST00000537178 GATA4P43694 442 aa8.49□□□□□ -1.05
CLIP1-209ENST00000537178 NBL1P41271 181 aa8.49□□□□□ -1.05
CLIP1-209ENST00000537178 Q8TCH9 128 aa8.49□□□□□ -1.05
CLIP1-209ENST00000537178 IGKV1-6A0A0C4DH72 117 aa8.48□□□□□ -1.05
CLIP1-209ENST00000537178 CLPSP04118 112 aa8.48□□□□□ -1.05
CLIP1-209ENST00000537178 KLHDC3Q9BQ90 382 aa8.48□□□□□ -1.05
CLIP1-209ENST00000537178 WNK1Q9H4A3 2382 aa8.48□□□□□ -1.05
CLIP1-209ENST00000537178 EGR2P11161 476 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-209ENST00000537178 A0A1B0GUS0 222 aa8.48□□□□□ -1.05
CLIP1-209ENST00000537178 IGLL1P15814 213 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms