RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 MFSD11O43934 449 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 IDO1P14902 403 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 EFNA4P52798 201 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 FXYD6P3P58550 94 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 MRPS36P82909 103 aaKnown RBP0.67□□□□□ -2.3
CD44-238ENST00000534296 PRB3Q04118 309 aaPredicted RBP0.67□□□□□ -2.3
CD44-238ENST00000534296 EIF3IQ13347 325 aaKnown RBP0.67□□□□□ -2.3
CD44-238ENST00000534296 MSMO1Q15800 293 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 KRTAP26-1Q6PEX3 210 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 PATE2Q6UY27 113 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 SMIM20Q8N5G0 67 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 GRPEL2Q8TAA5 225 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 HOPXQ9BPY8 73 aaPredicted RBP0.67□□□□□ -2.3
CD44-238ENST00000534296 CCDC32Q9BV29 185 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 OR2H1Q9GZK4 316 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 LAMTOR2Q9Y2Q5 125 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 UFC1Q9Y3C8 167 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 CNTRLQ7Z7A1 2325 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 FANCMQ8IYD8 2048 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 TET1Q8NFU7 2136 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 UNC13AQ9UPW8 1703 aa0.67□□□□□ -2.3
CD44-238ENST00000534296 TANC2Q9HCD6 1990 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 CDH23Q9H251 3354 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 HMCN2Q8NDA2 5059 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 LOC400499M0QZD8 3231 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 PPP5D1E7EU14 171 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 KPNA4O00629 521 aaPredicted RBP0.66□□□□□ -2.3
CD44-238ENST00000534296 CSN2P05814 226 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 FABP2P12104 132 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 INSL3P51460 131 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 LSM3P62310 102 aaKnown RBP0.66□□□□□ -2.3
CD44-238ENST00000534296 FKBP1CQ5VVH2 108 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 LINC00299Q6ZSB3 139 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 C5orf17Q8NAS9 161 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 OR5AK2Q8NH90 309 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 Q8TAT8 98 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 BORCS8Q96FH0 119 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 EFCAB11Q9BUY7 163 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 CST11Q9H112 138 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 NIT2Q9NQR4 276 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 SMPXQ9UHP9 88 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 ATPIF1Q9UII2 106 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 ASB4Q9Y574 426 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 FER1L6Q2WGJ9 1857 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 ARAP1Q96P48 1450 aa0.66□□□□□ -2.3
CD44-238ENST00000534296 MAP1AP78559 2803 aaPredicted RBP0.65□□□□□ -2.3
CD44-238ENST00000534296 NESP48681 1621 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 PEAK1Q9H792 1746 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 CENPEQ02224 2701 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 K7ERJ3 54 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 IGLV1-51P01701 117 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 KDELR1P24390 212 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 GNG10P50151 68 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 CRYBA4P53673 196 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 DIAPH2-AS1Q14236 149 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 DCUN1D2Q6PH85 259 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 STX12Q86Y82 276 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 SBSPONQ8IVN8 264 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 Q8N6K4 173 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.65□□□□□ -2.31
CD44-238ENST00000534296 PLEKHB2Q96CS7 222 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 OR4C12Q96R67 309 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 BOLA2Q9H3K6 86 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 NAT8BQ9UHF3 227 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 NUBP2Q9Y5Y2 271 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 ROCK1Q13464 1354 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 DMXL1Q9Y485 3027 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 SMG1Q96Q15 3661 aaKnown RBP0.65□□□□□ -2.31
CD44-238ENST00000534296 CAMSAP2Q08AD1 1489 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 BAZ1AQ9NRL2 1556 aaPredicted RBP0.65□□□□□ -2.31
CD44-238ENST00000534296 E9PCH4 1651 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 EML5Q05BV3 1969 aa0.65□□□□□ -2.31
CD44-238ENST00000534296 TOP2BQ02880 1626 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 CICQ96RK0 1608 aaPredicted RBP0.64□□□□□ -2.31
CD44-238ENST00000534296 C9orf170A2RU37 121 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 MAP1LC3B2A6NCE7 125 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 BBIP1A8MTZ0 92 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 E7EQ34 232 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 SULT1C4O75897 302 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 FAM107AO95990 144 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 TPT1P13693 172 aaKnown RBP0.64□□□□□ -2.31
CD44-238ENST00000534296 SDC2P34741 201 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 GLRXP35754 106 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 KRTAP5-10Q6L8G5 202 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 CASC2Q6XLA1 102 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 CARD19Q96LW7 228 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 RFX7Q2KHR2 1363 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 MUC16Q8WXI7 14507 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 DCHS2Q6V1P9 2916 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 PTPRDP23468 1912 aa0.64□□□□□ -2.31
CD44-238ENST00000534296 YTHDC2Q9H6S0 1430 aaKnown RBP0.64□□□□□ -2.31
CD44-238ENST00000534296 PRUNE2Q8WUY3 3088 aa0.63□□□□□ -2.31
CD44-238ENST00000534296 NBASA2RRP1 2371 aa0.63□□□□□ -2.31
CD44-238ENST00000534296 DNAH14Q0VDD8 3507 aa0.63□□□□□ -2.31
CD44-238ENST00000534296 PPRC1Q5VV67 1664 aaKnown RBP0.63□□□□□ -2.31
CD44-238ENST00000534296 COL1A1P02452 1464 aaPredicted RBP0.63□□□□□ -2.31
CD44-238ENST00000534296 ERCC6Q03468 1493 aa0.63□□□□□ -2.31
CD44-238ENST00000534296 TRBV30A0A0K0K1B3 111 aa0.63□□□□□ -2.31
CD44-238ENST00000534296 C5orf67F2Z3F1 127 aa0.63□□□□□ -2.31
CD44-238ENST00000534296 TRACP01848 142 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms