RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 BTN1A1Q13410 526 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 ICAM4Q14773 271 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 KHDC3LQ587J8 217 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 TMEM78Q5T7P6 136 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 Q6ZRN7 208 aaPredicted RBP7.8□□□□□ -1.16
VPS28-214ENST00000531032 EXOC3-AS1Q8N2X6 119 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 EIF4E3Q8N5X7 224 aaKnown RBP7.8□□□□□ -1.16
VPS28-214ENST00000531032 AGPAT4-IT1Q9H0P7 198 aa7.8□□□□□ -1.16
VPS28-214ENST00000531032 IGKV2-40A0A087WW87 121 aaPredicted RBP7.79□□□□□ -1.16
VPS28-214ENST00000531032 IGKV2D-40P01614 121 aaPredicted RBP7.79□□□□□ -1.16
VPS28-214ENST00000531032 RNASE4P34096 147 aaKnown RBP7.79□□□□□ -1.16
VPS28-214ENST00000531032 ZNF266Q14584 549 aa7.79□□□□□ -1.16
VPS28-214ENST00000531032 ACOT6Q3I5F7 207 aaPredicted RBP7.79□□□□□ -1.16
VPS28-214ENST00000531032 IBA57Q5T440 356 aaKnown RBP7.79□□□□□ -1.16
VPS28-214ENST00000531032 C9orf47Q6ZRZ4 202 aa7.79□□□□□ -1.16
VPS28-214ENST00000531032 ZFAND2AQ8N6M9 145 aa7.79□□□□□ -1.16
VPS28-214ENST00000531032 FAM167A-AS1Q96KT0 104 aa7.79□□□□□ -1.16
VPS28-214ENST00000531032 SCRT2Q9NQ03 307 aa7.79□□□□□ -1.16
VPS28-214ENST00000531032 KLF12Q9Y4X4 402 aa7.79□□□□□ -1.16
VPS28-214ENST00000531032 A0A1W2PPV4 95 aa7.78□□□□□ -1.16
VPS28-214ENST00000531032 SIVA1O15304 175 aa7.78□□□□□ -1.16
VPS28-214ENST00000531032 GPX1P07203 203 aa7.78□□□□□ -1.16
VPS28-214ENST00000531032 PHYHIPLQ96FC7 376 aa7.78□□□□□ -1.16
VPS28-214ENST00000531032 ST6GAL2Q96JF0 529 aa7.78□□□□□ -1.16
VPS28-214ENST00000531032 RGS13O14921 159 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 PAX4O43316 350 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 RANP62826 216 aaKnown RBP7.77□□□□□ -1.17
VPS28-214ENST00000531032 PRR9Q5T870 116 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 FXYD5Q96DB9 178 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 VGLL1Q99990 258 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 ZNF492Q9P255 531 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 TP53TG3Q9ULZ0 132 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 ICOSQ9Y6W8 199 aa7.77□□□□□ -1.17
VPS28-214ENST00000531032 IGHV1OR15-1A0A075B7D0 117 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 TRBV7-9A0A0J9YWB2 115 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 NXPH4O95158 308 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 FAM74A1Q5RGS3 127 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 Q6ZQT7 251 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 HSD17B11Q8NBQ5 300 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 CMTM2Q8TAZ6 248 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 ARPC5LQ9BPX5 153 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 WFDC1Q9HC57 220 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 MRPL16Q9NX20 251 aaKnown RBP7.76□□□□□ -1.17
VPS28-214ENST00000531032 PRO0255Q9UI72 69 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 RPH3ALQ9UNE2 315 aa7.76□□□□□ -1.17
VPS28-214ENST00000531032 FXYD6-FXYD2A0A087WZ82 144 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 IGHV3-53P01767 116 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 GIPP09681 153 aaPredicted RBP7.75□□□□□ -1.17
VPS28-214ENST00000531032 CRYBA4P53673 196 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 RAB2AP61019 212 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 SLAQ13239 276 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 PQLC2Q6ZP29 291 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 LYPD1Q8N2G4 141 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 INO80EQ8NBZ0 244 aaPredicted RBP7.75□□□□□ -1.17
VPS28-214ENST00000531032 Q8TAT8 98 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 ASB13Q8WXK3 278 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 HYLS1Q96M11 299 aa7.75□□□□□ -1.17
VPS28-214ENST00000531032 EIF3GO75821 320 aaKnown RBP eCLIP7.74□□□□□ -1.17
VPS28-214ENST00000531032 CDC34P49427 236 aaPredicted RBP7.74□□□□□ -1.17
VPS28-214ENST00000531032 ZNF138P52744 262 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 ZNF415Q09FC8 603 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 FHL2Q14192 279 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 CDPF1Q6NVV7 123 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 LYPD5Q6UWN5 251 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 Q6ZNX1 250 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 OR10G4Q8NGN3 311 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 OR10G9Q8NGN4 311 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 OR10G7Q8NGN6 311 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 AQP10Q96PS8 301 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 OTORQ9NRC9 128 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 PGPEP1Q9NXJ5 209 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 HHLA3Q9XRX5 114 aa7.74□□□□□ -1.17
VPS28-214ENST00000531032 RBAKDNA6NC62 111 aa7.73□□□□□ -1.17
VPS28-214ENST00000531032 HMGB3O15347 200 aaKnown RBP7.73□□□□□ -1.17
VPS28-214ENST00000531032 ERVFC1-1P60608 527 aa7.73□□□□□ -1.17
VPS28-214ENST00000531032 MRPL23Q16540 153 aaKnown RBP7.73□□□□□ -1.17
VPS28-214ENST00000531032 Q5BKY6 102 aa7.73□□□□□ -1.17
VPS28-214ENST00000531032 IQCF2Q8IXL9 164 aa7.73□□□□□ -1.17
VPS28-214ENST00000531032 C8orf49Q96NF6 230 aa7.73□□□□□ -1.17
VPS28-214ENST00000531032 BORCS7-ASMTA0A0B4J1R7 106 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 PGPA6NDG6 321 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 EREGO14944 169 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 MBP02144 154 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 NEGR1Q7Z3B1 354 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 NFE4Q86UQ8 179 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 OR2T35Q8NGX2 323 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 RASL10AQ92737 203 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 PSMG3Q9BT73 122 aaPredicted RBP7.72□□□□□ -1.17
VPS28-214ENST00000531032 MDFICQ9P1T7 246 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 TNFRSF18Q9Y5U5 241 aa7.72□□□□□ -1.17
VPS28-214ENST00000531032 A0A1B0GVG6 124 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 DIRC3C9JPN6 131 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 K7EP13 123 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 K7EQD1 137 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 ARL14EPLP0DKL9 152 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 ATP6V0CP27449 155 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 FUSP35637 526 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS28-214ENST00000531032 MUC21Q5SSG8 566 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 Q6AWC8 147 aa7.71□□□□□ -1.18
VPS28-214ENST00000531032 GOLT1AQ6ZVE7 132 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms