RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CXCL1P09341 107 aa15.64■□□□□ 0.09
VPS28-208ENST00000527797 CMC4P56277 68 aaPredicted RBP15.64■□□□□ 0.09
VPS28-208ENST00000527797 SHISA2Q6UWI4 295 aa15.64■□□□□ 0.09
VPS28-208ENST00000527797 TRBV24-1A0A075B6N3 115 aa15.63■□□□□ 0.09
VPS28-208ENST00000527797 SMIM27A0A1W2PRY6 76 aa15.63■□□□□ 0.09
VPS28-208ENST00000527797 CRISP2P16562 243 aa15.63■□□□□ 0.09
VPS28-208ENST00000527797 C9orf66Q5T8R8 295 aa15.63■□□□□ 0.09
VPS28-208ENST00000527797 ZFAND2AQ8N6M9 145 aa15.63■□□□□ 0.09
VPS28-208ENST00000527797 TSKUQ8WUA8 353 aa15.63■□□□□ 0.09
VPS28-208ENST00000527797 ODF3Q96PU9 254 aa15.63■□□□□ 0.09
VPS28-208ENST00000527797 KNCNA6PVL3 124 aa15.62■□□□□ 0.09
VPS28-208ENST00000527797 GPX1P07203 203 aa15.62■□□□□ 0.09
VPS28-208ENST00000527797 ACTL10Q5JWF8 245 aa15.62■□□□□ 0.09
VPS28-208ENST00000527797 PYGO2Q9BRQ0 406 aa15.62■□□□□ 0.09
VPS28-208ENST00000527797 TMEM189A5PLL7 270 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 J3KRW8 73 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 LEPP41159 167 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 TCL1AP56279 114 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 BTF3L4Q96K17 158 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 FAM210BQ96KR6 192 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 MCRIP2Q9BUT9 160 aaKnown RBP15.61■□□□□ 0.09
VPS28-208ENST00000527797 TRAV9-1A0A075B6T8 112 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 IGKV3-20P01619 116 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 HLA-DRB4P13762 266 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 RAB5AP20339 215 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 ODF3L2Q3SX64 289 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 SPATA3Q8NHX4 192 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 WNK1Q9H4A3 2382 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 HLA-DRB4X5D2U9 266 aa15.61■□□□□ 0.09
VPS28-208ENST00000527797 OR11H12B2RN74 326 aa15.6■□□□□ 0.09
VPS28-208ENST00000527797 BEAN1Q3B7T3 259 aa15.6■□□□□ 0.09
VPS28-208ENST00000527797 PRR9Q5T870 116 aa15.6■□□□□ 0.09
VPS28-208ENST00000527797 APRG1Q8IVJ8 170 aa15.6■□□□□ 0.09
VPS28-208ENST00000527797 WFDC9Q8NEX5 89 aa15.6■□□□□ 0.09
VPS28-208ENST00000527797 GFRA4Q9GZZ7 299 aa15.6■□□□□ 0.09
VPS28-208ENST00000527797 NAT8BQ9UHF3 227 aa15.6■□□□□ 0.09
VPS28-208ENST00000527797 XKRY2A2RUG3 117 aa15.59■□□□□ 0.09
VPS28-208ENST00000527797 H3BMM0 161 aa15.59■□□□□ 0.09
VPS28-208ENST00000527797 TSPOP30536 169 aa15.59■□□□□ 0.09
VPS28-208ENST00000527797 RPL19P84098 196 aaKnown RBP15.59■□□□□ 0.09
VPS28-208ENST00000527797 ZNF124Q15973 351 aa15.59■□□□□ 0.09
VPS28-208ENST00000527797 NEU1Q99519 415 aa15.59■□□□□ 0.09
VPS28-208ENST00000527797 FAM231BA6NCW3 169 aa15.58■□□□□ 0.09
VPS28-208ENST00000527797 ORM1P02763 201 aa15.58■□□□□ 0.09
VPS28-208ENST00000527797 RNASE4P34096 147 aaKnown RBP15.58■□□□□ 0.09
VPS28-208ENST00000527797 RPS20P60866 119 aaKnown RBP15.58■□□□□ 0.09
VPS28-208ENST00000527797 TRAV21A0A0B4J279 112 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 KLLNB2CW77 178 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 FAM110AQ9BQ89 295 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 A8MTW9 85 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 HIGD1CA8MV81 97 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 LINC01559Q495D7 138 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 Q6AWC8 147 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 AMTNQ6UX39 209 aa15.57■□□□□ 0.08
VPS28-208ENST00000527797 TMSB15BA0A087X1C1 80 aa15.56■□□□□ 0.08
VPS28-208ENST00000527797 GZMBP10144 247 aa15.56■□□□□ 0.08
VPS28-208ENST00000527797 CDKN1BP46527 198 aa15.56■□□□□ 0.08
VPS28-208ENST00000527797 RPS10P46783 165 aaKnown RBP15.56■□□□□ 0.08
VPS28-208ENST00000527797 NUP35Q8NFH5 326 aa15.56■□□□□ 0.08
VPS28-208ENST00000527797 GTSF1Q8WW33 167 aa15.56■□□□□ 0.08
VPS28-208ENST00000527797 TYMSP04818 313 aa15.55■□□□□ 0.08
VPS28-208ENST00000527797 CD7P09564 240 aa15.55■□□□□ 0.08
VPS28-208ENST00000527797 KIR3DS1Q14943 382 aa15.55■□□□□ 0.08
VPS28-208ENST00000527797 ATRQ13535 2644 aa15.55■□□□□ 0.08
VPS28-208ENST00000527797 C7orf71A4D174 169 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 M0R2Z0 102 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 SPINK13Q1W4C9 94 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 C11orf21Q9P2W6 132 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 SPINK4O60575 86 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 FOXA3P55318 350 aaPredicted RBP15.54■□□□□ 0.08
VPS28-208ENST00000527797 Q6ZQT7 251 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 STHQ8IWL8 128 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 PGLYRP4Q96LB8 373 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 CLUHP3Q96NS8 147 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 SRD5A3Q9H8P0 318 aa15.54■□□□□ 0.08
VPS28-208ENST00000527797 IGKV3D-20A0A0C4DH25 116 aa15.53■□□□□ 0.08
VPS28-208ENST00000527797 IGLL1P15814 213 aa15.52■□□□□ 0.08
VPS28-208ENST00000527797 C19orf73Q9NVV2 129 aa15.52■□□□□ 0.08
VPS28-208ENST00000527797 TMA7Q9Y2S6 64 aaKnown RBP15.52■□□□□ 0.08
VPS28-208ENST00000527797 TENM1Q9UKZ4 2725 aa15.52■□□□□ 0.07
VPS28-208ENST00000527797 TRAV12-2A0A075B6T6 113 aa15.51■□□□□ 0.07
VPS28-208ENST00000527797 RBMY1BA6NDE4 496 aaKnown RBP15.51■□□□□ 0.07
VPS28-208ENST00000527797 RBMY1EA6NEQ0 496 aaKnown RBP15.51■□□□□ 0.07
VPS28-208ENST00000527797 RBMY1DP0C7P1 496 aaKnown RBP15.51■□□□□ 0.07
VPS28-208ENST00000527797 GFI1BQ5VTD9 330 aa15.51■□□□□ 0.07
VPS28-208ENST00000527797 MRPL54Q6P161 138 aaKnown RBP15.51■□□□□ 0.07
VPS28-208ENST00000527797 NAGKQ9UJ70 344 aa15.51■□□□□ 0.07
VPS28-208ENST00000527797 TRAV12-3A0A0B4J271 114 aa15.5■□□□□ 0.07
VPS28-208ENST00000527797 GRIFINA4D1Z8 144 aa15.5■□□□□ 0.07
VPS28-208ENST00000527797 FXYD7P58549 80 aa15.5■□□□□ 0.07
VPS28-208ENST00000527797 TRPT1Q86TN4 253 aaKnown RBP15.5■□□□□ 0.07
VPS28-208ENST00000527797 GTSCR1Q86UQ5 136 aa15.5■□□□□ 0.07
VPS28-208ENST00000527797 ZNF575Q86XF7 245 aa15.5■□□□□ 0.07
VPS28-208ENST00000527797 TPPP3Q9BW30 176 aa15.5■□□□□ 0.07
VPS28-208ENST00000527797 ZNF324O75467 553 aaPredicted RBP15.49■□□□□ 0.07
VPS28-208ENST00000527797 COX19Q49B96 90 aa15.49■□□□□ 0.07
VPS28-208ENST00000527797 ATP5L2Q7Z4Y8 100 aa15.49■□□□□ 0.07
VPS28-208ENST00000527797 FER1L6-AS1Q8NA97 138 aa15.49■□□□□ 0.07
VPS28-208ENST00000527797 FBN1P35555 2871 aaKnown RBP15.48■□□□□ 0.07
VPS28-208ENST00000527797 C1orf196B1AJZ1 125 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 203.4 ms