RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 LINC00483Q53H64 154 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 PYDC2Q56P42 97 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 C10orf55Q5SWW7 151 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 TEX261Q6UWH6 196 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 NDUFA11Q86Y39 141 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 APRG1Q8IVJ8 170 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 VKORC1L1Q8N0U8 176 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 OR4X2Q8NGF9 303 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 OR13C8Q8NGS7 320 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 OR52E5Q8NH55 327 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 OR51H1Q8NH63 302 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 SGMS2Q8NHU3 365 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 RNASEH2CQ8TDP1 164 aaKnown RBP2.35□□□□□ -2.03
CD44-219ENST00000525685 ORAOV1Q8WV07 137 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 DEDD2Q8WXF8 326 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 FAM103A1Q9BTL3 118 aaKnown RBP2.35□□□□□ -2.03
CD44-219ENST00000525685 COMMD9Q9P000 198 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 UFC1Q9Y3C8 167 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 V9GYY9 64 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 TET2Q6N021 2002 aaPredicted RBP2.35□□□□□ -2.03
CD44-219ENST00000525685 FBN3Q75N90 2809 aa2.35□□□□□ -2.03
CD44-219ENST00000525685 MTORP42345 2549 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 CMYA5Q8N3K9 4069 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TGIF2-C20orf24A0A0A6YYL0 155 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TRAV3A0A0B4J244 114 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TRAV41A0A0B4J266 112 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 A0A1B0GW64 132 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TCRBV4S1A1TA0A5B7 111 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 E7EUB6 86 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 F6UZH7 168 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 UPK2O00526 184 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 CREBL2O60519 120 aaPredicted RBP2.34□□□□□ -2.03
CD44-219ENST00000525685 HSBP1O75506 76 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 OR2A4O95047 310 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 HPRT1P00492 218 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 IGKV1-39P01597 117 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 HLA-AP01891 365 aaKnown RBP2.34□□□□□ -2.03
CD44-219ENST00000525685 IGKV1D-39P04432 117 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 CTSDP07339 412 aaPredicted RBP2.34□□□□□ -2.03
CD44-219ENST00000525685 APELAP0DMC3 54 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 HIST1H1EP10412 219 aaKnown RBP2.34□□□□□ -2.03
CD44-219ENST00000525685 PSMB8P28062 276 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 LPAR6P43657 344 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 PIGPP57054 158 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TAS2R31P59538 309 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 CKS1BP61024 79 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 DEFA5Q01523 94 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 FXYD3Q14802 87 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 SURF2Q15527 256 aaPredicted RBP2.34□□□□□ -2.03
CD44-219ENST00000525685 PRSS8Q16651 343 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 SCGB2B2Q4G0G5 96 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 OCIAD2Q56VL3 154 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 Q5BKY6 102 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 FAM78BQ5VT40 261 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 UNQ5815/PRO19632Q6UWF5 114 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 NIT1Q86X76 327 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 CMTM1Q8IZ96 169 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TCTE3Q8IZS6 198 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TOMM5Q8N4H5 51 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 SMIM20Q8N5G0 67 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TCTEX1D1Q8N7M0 179 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 OR10G4Q8NGN3 311 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 OR1P1Q8NH06 330 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 VSTM2AQ8TAG5 236 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TMEM167AQ8TBQ9 72 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 MYOZ3Q8TDC0 251 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 ASB13Q8WXK3 278 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 TMEM230Q96A57 120 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 ISOC2Q96AB3 205 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 OR10C1Q96KK4 312 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 OR2A7Q96R45 310 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 SLC25A2Q9BXI2 301 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 BET1LQ9NYM9 111 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 PSG8Q9UQ74 426 aa2.34□□□□□ -2.03
CD44-219ENST00000525685 MAP1AP78559 2803 aaPredicted RBP2.33□□□□□ -2.04
CD44-219ENST00000525685 IGHV3-66A0A0C4DH42 116 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 CRYM-AS1A6NIL9 109 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 C1orf196B1AJZ1 125 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 H3BUA1 57 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 SNAPC5O75971 98 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 HRASP01112 189 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 IFNA1P01562 189 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 IGKV1-5P01602 117 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 OR5AC1P0C628 307 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 PVALBP20472 110 aaPredicted RBP2.33□□□□□ -2.04
CD44-219ENST00000525685 NPY1RP25929 384 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 FAUP35544 74 aaKnown RBP2.33□□□□□ -2.04
CD44-219ENST00000525685 G6PCP35575 357 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 RPL27AP46776 148 aaKnown RBP2.33□□□□□ -2.04
CD44-219ENST00000525685 RAB25P57735 213 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 TMEM267Q0VDI3 215 aaPredicted RBP2.33□□□□□ -2.04
CD44-219ENST00000525685 DEFB136Q30KP8 78 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 TMEM128Q5BJH2 165 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 PYY3Q5JQD4 70 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 ZNF695Q8IW36 515 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 OR4A5Q8NH83 315 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 MRAP2Q96G30 205 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 SMIM8Q96KF7 97 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 LINC00052Q96N35 136 aa2.33□□□□□ -2.04
CD44-219ENST00000525685 TP53RKQ96S44 253 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms