RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 LGALS9CQ6DKI2 356 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 SLC25A34Q6PIV7 304 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 IGHV7-4-1A0A0J9YVY3 117 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 SOCS3O14543 225 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 SMAD7O15105 426 aaKnown RBP11.33□□□□□ -0.6
NUP54-217ENST00000514987 BLCAPP62952 87 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 CFHR3Q02985 330 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 GAGE1Q13065 139 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 UNQ9165/PRO28630Q6UXU0 137 aa11.33□□□□□ -0.6
NUP54-217ENST00000514987 A0A096LNJ9 63 aa11.32□□□□□ -0.6
NUP54-217ENST00000514987 hDV102S1A0JD36 115 aa11.32□□□□□ -0.6
NUP54-217ENST00000514987 SNAI2O43623 268 aa11.32□□□□□ -0.6
NUP54-217ENST00000514987 TRBV12-3P01733 135 aa11.32□□□□□ -0.6
NUP54-217ENST00000514987 ZNF25P17030 456 aaPredicted RBP11.32□□□□□ -0.6
NUP54-217ENST00000514987 PSMG4Q5JS54 123 aa11.32□□□□□ -0.6
NUP54-217ENST00000514987 MSRB1Q9NZV6 116 aa11.32□□□□□ -0.6
NUP54-217ENST00000514987 C11orf21Q9P2W6 132 aa11.32□□□□□ -0.6
NUP54-217ENST00000514987 TIMM8BQ9Y5J9 83 aaPredicted RBP11.32□□□□□ -0.6
NUP54-217ENST00000514987 PKD1L2Q7Z442 2459 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 TRAV21A0A0B4J279 112 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 FAM106AQ4KMX7 169 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 PRSS57Q6UWY2 283 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 DEFB125Q8N687 156 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 C20orf173Q96LM9 149 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 KLK15Q9H2R5 256 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 SCRT2Q9NQ03 307 aa11.31□□□□□ -0.6
NUP54-217ENST00000514987 DAZ1Q9NQZ3 744 aaKnown RBP11.31□□□□□ -0.6
NUP54-217ENST00000514987 PEF1Q9UBV8 284 aaKnown RBP11.31□□□□□ -0.6
NUP54-217ENST00000514987 CACNA1AO00555 2505 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 PRSS47A8MTI9 375 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 SMKR1H3BMG3 65 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 TNFRSF6BO95407 300 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 IGHV3-11P01762 117 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 MED14OSP0DP75 135 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 COX6B1P14854 86 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 GPHB5Q86YW7 130 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 OR1N2Q8NGR9 330 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 IFI27L1Q96BM0 104 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 GOLT1BQ9Y3E0 138 aa11.3□□□□□ -0.6
NUP54-217ENST00000514987 H0Y8G0 127 aa11.29□□□□□ -0.6
NUP54-217ENST00000514987 NCR2O95944 276 aa11.29□□□□□ -0.6
NUP54-217ENST00000514987 AVPP01185 164 aa11.29□□□□□ -0.6
NUP54-217ENST00000514987 LOXL1Q08397 574 aaPredicted RBP11.29□□□□□ -0.6
NUP54-217ENST00000514987 SPANXN1Q5VSR9 72 aa11.29□□□□□ -0.6
NUP54-217ENST00000514987 OR8A1Q8NGG7 326 aa11.29□□□□□ -0.6
NUP54-217ENST00000514987 RHPN1-AS1Q9BWJ2 59 aa11.29□□□□□ -0.6
NUP54-217ENST00000514987 SMPXQ9UHP9 88 aa11.29□□□□□ -0.6
NUP54-217ENST00000514987 DLEU1O43261 78 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 FCER1GP30273 86 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 ID1P41134 155 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 AKAP6Q13023 2319 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 FOXE3Q13461 319 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 APRG1Q8IVJ8 170 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 STPG4Q8N801 248 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 Q8N8P6 123 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 MRAP2Q96G30 205 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 TMEM208Q9BTX3 173 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 UFC1Q9Y3C8 167 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 HINT1P49773 126 aaPredicted RBP11.28□□□□□ -0.6
NUP54-217ENST00000514987 RPL11P62913 178 aaKnown RBP11.28□□□□□ -0.6
NUP54-217ENST00000514987 C12orf54Q6X4T0 127 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 ZFAND2AQ8N6M9 145 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 OR2K2Q8NGT1 345 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 FAM19A4Q96LR4 140 aa11.28□□□□□ -0.6
NUP54-217ENST00000514987 COX8AP10176 69 aa11.27□□□□□ -0.61
NUP54-217ENST00000514987 G0S2P27469 103 aa11.27□□□□□ -0.61
NUP54-217ENST00000514987 PSMB8P28062 276 aa11.27□□□□□ -0.61
NUP54-217ENST00000514987 DEFB112Q30KQ8 113 aa11.27□□□□□ -0.61
NUP54-217ENST00000514987 CACNA1BQ00975 2339 aa11.26□□□□□ -0.61
NUP54-217ENST00000514987 ASIPP42127 132 aa11.26□□□□□ -0.61
NUP54-217ENST00000514987 Q6ZS46 218 aa11.26□□□□□ -0.61
NUP54-217ENST00000514987 ORAOV1Q8WV07 137 aa11.26□□□□□ -0.61
NUP54-217ENST00000514987 DOPEY1Q5JWR5 2465 aa11.26□□□□□ -0.61
NUP54-217ENST00000514987 A0A096LNT2 108 aa11.25□□□□□ -0.61
NUP54-217ENST00000514987 EVI2AP22794 236 aa11.25□□□□□ -0.61
NUP54-217ENST00000514987 LEPP41159 167 aa11.25□□□□□ -0.61
NUP54-217ENST00000514987 TM4SF20Q53R12 229 aa11.25□□□□□ -0.61
NUP54-217ENST00000514987 PIEZO1Q92508 2521 aa11.25□□□□□ -0.61
NUP54-217ENST00000514987 H3BVH4 76 aa11.24□□□□□ -0.61
NUP54-217ENST00000514987 IGHV4-59P01825 116 aa11.24□□□□□ -0.61
NUP54-217ENST00000514987 TFPI2P48307 235 aa11.24□□□□□ -0.61
NUP54-217ENST00000514987 PRR9Q5T870 116 aa11.24□□□□□ -0.61
NUP54-217ENST00000514987 MCRIP2Q9BUT9 160 aaKnown RBP11.24□□□□□ -0.61
NUP54-217ENST00000514987 ATP5LO75964 103 aa11.24□□□□□ -0.61
NUP54-217ENST00000514987 TGFAP01135 160 aa11.24□□□□□ -0.61
NUP54-217ENST00000514987 S100A4P26447 101 aaKnown RBP11.24□□□□□ -0.61
NUP54-217ENST00000514987 NRACQ8N912 160 aa11.24□□□□□ -0.61
NUP54-217ENST00000514987 IGLV2-18A0A075B6J9 118 aa11.23□□□□□ -0.61
NUP54-217ENST00000514987 K7EMI3 77 aa11.23□□□□□ -0.61
NUP54-217ENST00000514987 BEX4Q9NWD9 120 aaPredicted RBP11.23□□□□□ -0.61
NUP54-217ENST00000514987 PPP1R17O96001 155 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 FSHBP01225 129 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 LAGE3Q14657 143 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 NRGNQ92686 78 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 ODF3Q96PU9 254 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 DPH3P1Q9H4G8 78 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 VPREB3Q9UKI3 123 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 PHLDA3Q9Y5J5 127 aa11.22□□□□□ -0.61
NUP54-217ENST00000514987 NUDT3O95989 172 aa11.21□□□□□ -0.61
NUP54-217ENST00000514987 ELANEP08246 267 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms