RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 A0A1W2PS18 150 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 H3BRM9 83 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 PAGE4O60829 102 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 PRB4P10163 310 aaPredicted RBP6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 AJUBAQ96IF1 538 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 KCNS1Q96KK3 526 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 IFI27L2Q9H2X8 130 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 ZNF702PQ9H963 129 aa6.18□□□□□ -1.42
LIMCH1-219ENST00000514096 LINC00473A8K010 186 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 OOSP1A8MZH6 123 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 OR5AL1P0C617 328 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 DYNLT3P51808 116 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 QRFPP83859 136 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 FXYD3Q14802 87 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 GAPTQ8N292 157 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 ADTRPQ96IZ2 230 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 SPATA25Q9BR10 227 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 NAA60Q9H7X0 242 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 TEX50A0A1B0GTY4 177 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 ODF3BA8MYP8 253 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 NPIPB11E5RHQ5 1161 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 RPL30P62888 115 aaKnown RBP6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 CX3CL1P78423 397 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 CXorf66Q5JRM2 361 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 MINOS1Q5TGZ0 78 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 SPSB3Q6PJ21 355 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 Q6ZSR3 168 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 TEX45Q8NA69 505 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 SPANXB1Q9NS25 103 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 TMEM242Q9NWH2 141 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 MINOS1-NBL1R4GNA1 71 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 A6NDX4 124 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 PSMB2P49721 201 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 EWSR1Q01844 656 aaKnown RBP eCLIP6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 RTL8BQ17RB0 113 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 SLC25A48Q6ZT89 311 aaKnown RBP6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 NABP2Q9BQ15 211 aa6.17□□□□□ -1.42
LIMCH1-219ENST00000514096 TTC9CQ8N5M4 171 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 DNAJC30Q96LL9 226 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 PRADC1Q9BSG0 188 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 CHCHD5Q9BSY4 110 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 NBR2O15453 112 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 RS1O15537 224 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 YPEL1O60688 119 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 NDUFB4O95168 129 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 NAPSAO96009 420 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 TRGV3P03979 118 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 LINC00869P0C866 280 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 FOXA3P55318 350 aaPredicted RBP6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 PROK1P58294 105 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 NDPQ00604 133 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM106AQ4KMX7 169 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM162BQ5T6X4 162 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 YPEL2Q96QA6 119 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 RPRMQ9NS64 109 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 KBTBD11O94819 623 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 LEPROTL1O95214 131 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 HLA-DRB1P01911 266 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 AMY1AP04745 511 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 IGLC6P0CF74 106 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 C1orf195Q5TG92 126 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 CYP2G1PQ6ZSU1 146 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 LYZL2Q7Z4W2 148 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 OR8A1Q8NGG7 326 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 SCRT1Q9BWW7 348 aa6.16□□□□□ -1.42
LIMCH1-219ENST00000514096 TRAV3A0A0B4J244 114 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 TMEM89A2RUT3 159 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 SRRM4A7MD48 611 aaKnown RBP6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 PROP1O75360 226 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 SLC25A5P05141 298 aaKnown RBP6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 FRMD6-AS1P0C7T7 363 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 CGB3P0DN86 165 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 CGB7P0DN87 165 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 GAGE2AQ6NT46 116 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 UFSP1Q6NVU6 142 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 LINC00596Q86U02 117 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 TM2D1Q9BX74 207 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 TMEM126AQ9H061 195 aa6.15□□□□□ -1.42
LIMCH1-219ENST00000514096 FAM90A8PA6NJQ4 464 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 PPYP01298 95 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 HERVK_113P61574 105 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 Q6AWC8 147 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 PPP1R27Q86WC6 154 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 Q8N9W7 124 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 BRK1Q8WUW1 75 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 TM2D2Q9BX73 214 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 CGB1A6NKQ9 187 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 ID3Q02535 119 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 ZNF818PQ6ZRF7 136 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 LYPD6Q86Y78 171 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 OR2W1Q9Y3N9 320 aa6.15□□□□□ -1.43
LIMCH1-219ENST00000514096 TRBV6-7A0A0A0MS04 114 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 SLURP1P55000 103 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 C5orf56Q8N8D9 126 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 STAB2Q8WWQ8 2551 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 H0YJW9 148 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 APCSP02743 223 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 ORM1P02763 201 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 VWC2Q2TAL6 325 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 ODF3L1Q8IXM7 274 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms