RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TRAV12-3A0A0B4J271 114 aa21.48■■□□□ 1.03
LIMCH1-211ENST00000509638 RNASE4P34096 147 aaKnown RBP21.48■■□□□ 1.03
LIMCH1-211ENST00000509638 RAB14P61106 215 aa21.48■■□□□ 1.03
LIMCH1-211ENST00000509638 FAM210AQ96ND0 272 aa21.48■■□□□ 1.03
LIMCH1-211ENST00000509638 KLF12Q9Y4X4 402 aa21.48■■□□□ 1.03
LIMCH1-211ENST00000509638 ZNF506Q5JVG8 444 aa21.47■■□□□ 1.03
LIMCH1-211ENST00000509638 TMEM183BQ1AE95 376 aa21.46■■□□□ 1.03
LIMCH1-211ENST00000509638 U3KQK5 164 aa21.46■■□□□ 1.03
LIMCH1-211ENST00000509638 X6R8D5 127 aa21.46■■□□□ 1.03
LIMCH1-211ENST00000509638 C8orf49Q96NF6 230 aa21.45■■□□□ 1.02
LIMCH1-211ENST00000509638 C20orf144Q9BQM9 153 aa21.45■■□□□ 1.02
LIMCH1-211ENST00000509638 EIF5A2Q9GZV4 153 aaKnown RBP21.45■■□□□ 1.02
LIMCH1-211ENST00000509638 TMEM256Q8N2U0 113 aa21.44■■□□□ 1.02
LIMCH1-211ENST00000509638 NIPSNAP3BQ9BS92 247 aa21.44■■□□□ 1.02
LIMCH1-211ENST00000509638 DERL1Q9BUN8 251 aa21.44■■□□□ 1.02
LIMCH1-211ENST00000509638 SAPCD1Q5SSQ6 148 aa21.43■■□□□ 1.02
LIMCH1-211ENST00000509638 TRBV6-1A0A0K0K1D8 114 aa21.42■■□□□ 1.02
LIMCH1-211ENST00000509638 RPL35P42766 123 aaKnown RBP21.42■■□□□ 1.02
LIMCH1-211ENST00000509638 LINC01587Q99440 93 aa21.42■■□□□ 1.02
LIMCH1-211ENST00000509638 H7BYZ3 331 aa21.41■■□□□ 1.02
LIMCH1-211ENST00000509638 LTAP01374 205 aa21.41■■□□□ 1.02
LIMCH1-211ENST00000509638 S100A9P06702 114 aaKnown RBP21.41■■□□□ 1.02
LIMCH1-211ENST00000509638 Q6ZQT7 251 aa21.41■■□□□ 1.02
LIMCH1-211ENST00000509638 MED9Q9NWA0 146 aa21.41■■□□□ 1.02
LIMCH1-211ENST00000509638 CLLU1Q5K131 121 aa21.4■■□□□ 1.02
LIMCH1-211ENST00000509638 Q8NAQ8 132 aa21.4■■□□□ 1.02
LIMCH1-211ENST00000509638 NEU1Q99519 415 aa21.4■■□□□ 1.02
LIMCH1-211ENST00000509638 ZNF324O75467 553 aaPredicted RBP21.4■■□□□ 1.02
LIMCH1-211ENST00000509638 MIFP14174 115 aa21.4■■□□□ 1.02
LIMCH1-211ENST00000509638 Q6AWC8 147 aa21.4■■□□□ 1.02
LIMCH1-211ENST00000509638 ZFP30Q9Y2G7 519 aa21.4■■□□□ 1.02
LIMCH1-211ENST00000509638 IGHV4-28A0A0C4DH34 117 aa21.39■■□□□ 1.01
LIMCH1-211ENST00000509638 GCGP01275 180 aa21.39■■□□□ 1.01
LIMCH1-211ENST00000509638 SMUG1Q53HV7 270 aa21.39■■□□□ 1.01
LIMCH1-211ENST00000509638 PRM2P04554 102 aa21.38■■□□□ 1.01
LIMCH1-211ENST00000509638 HTN1P15515 57 aa21.38■■□□□ 1.01
LIMCH1-211ENST00000509638 NHLRC2Q8NBF2 726 aa21.38■■□□□ 1.01
LIMCH1-211ENST00000509638 ZNF705GA8MUZ8 300 aaPredicted RBP21.37■■□□□ 1.01
LIMCH1-211ENST00000509638 TMEM250H0YL14 139 aa21.37■■□□□ 1.01
LIMCH1-211ENST00000509638 ZNF80P51504 273 aaPredicted RBP21.37■■□□□ 1.01
LIMCH1-211ENST00000509638 TAS2R60P59551 318 aa21.37■■□□□ 1.01
LIMCH1-211ENST00000509638 RRN3P1Q2M238 152 aa21.37■■□□□ 1.01
LIMCH1-211ENST00000509638 PYGO2Q9BRQ0 406 aa21.37■■□□□ 1.01
LIMCH1-211ENST00000509638 SMIM9A6NGZ8 99 aa21.36■■□□□ 1.01
LIMCH1-211ENST00000509638 DEFB4AO15263 64 aa21.36■■□□□ 1.01
LIMCH1-211ENST00000509638 ZC2HC1AQ96GY0 325 aa21.36■■□□□ 1.01
LIMCH1-211ENST00000509638 CENPWQ5EE01 88 aa21.36■■□□□ 1.01
LIMCH1-211ENST00000509638 TRAV21A0A0B4J279 112 aa21.35■■□□□ 1.01
LIMCH1-211ENST00000509638 A0A0J9YWU9 116 aa21.35■■□□□ 1.01
LIMCH1-211ENST00000509638 RGS13O14921 159 aa21.35■■□□□ 1.01
LIMCH1-211ENST00000509638 CEBPGP53567 150 aa21.35■■□□□ 1.01
LIMCH1-211ENST00000509638 BAGE2Q86Y30 109 aa21.35■■□□□ 1.01
LIMCH1-211ENST00000509638 TMEM183AQ8IXX5 376 aa21.35■■□□□ 1.01
LIMCH1-211ENST00000509638 C11orf68Q9H3H3 251 aaKnown RBP21.35■■□□□ 1.01
LIMCH1-211ENST00000509638 RAB19A4D1S5 217 aa21.33■■□□□ 1.01
LIMCH1-211ENST00000509638 PFN1P07737 140 aaKnown RBP21.33■■□□□ 1.01
LIMCH1-211ENST00000509638 MUC21Q5SSG8 566 aa21.33■■□□□ 1.01
LIMCH1-211ENST00000509638 COX8CQ7Z4L0 72 aa21.33■■□□□ 1.01
LIMCH1-211ENST00000509638 PARLQ9H300 379 aa21.33■■□□□ 1.01
LIMCH1-211ENST00000509638 NAGKQ9UJ70 344 aa21.33■■□□□ 1.01
LIMCH1-211ENST00000509638 TRBV20OR9-2A0A075B6H5 130 aa21.32■■□□□ 1
LIMCH1-211ENST00000509638 NDUFS6O75380 124 aaKnown RBP21.32■■□□□ 1
LIMCH1-211ENST00000509638 GNG4P50150 75 aa21.32■■□□□ 1
LIMCH1-211ENST00000509638 SRSF3P84103 164 aaKnown RBP21.32■■□□□ 1
LIMCH1-211ENST00000509638 ZNF674Q2M3X9 581 aa21.32■■□□□ 1
LIMCH1-211ENST00000509638 SRP19P09132 144 aaKnown RBP21.31■■□□□ 1
LIMCH1-211ENST00000509638 AZU1P20160 251 aa21.31■■□□□ 1
LIMCH1-211ENST00000509638 IGHV1OR15-1A0A075B7D0 117 aa21.31■■□□□ 1
LIMCH1-211ENST00000509638 LINC00467Q9BRT7 94 aa21.31■■□□□ 1
LIMCH1-211ENST00000509638 MLST8Q9BVC4 326 aa21.31■■□□□ 1
LIMCH1-211ENST00000509638 EMP1P54849 157 aa21.3■■□□□ 1
LIMCH1-211ENST00000509638 PEA15Q15121 130 aa21.3■■□□□ 1
LIMCH1-211ENST00000509638 EIF4E3Q8N5X7 224 aaKnown RBP21.3■■□□□ 1
LIMCH1-211ENST00000509638 TMEM263Q8WUH6 116 aaKnown RBP21.3■■□□□ 1
LIMCH1-211ENST00000509638 EDA2RQ9HAV5 297 aa21.3■■□□□ 1
LIMCH1-211ENST00000509638 CBY3A6NI87 242 aa21.29■■□□□ 1
LIMCH1-211ENST00000509638 RNASE8Q8TDE3 154 aaKnown RBP21.29■■□□□ 1
LIMCH1-211ENST00000509638 C16orf74Q96GX8 76 aa21.29■■□□□ 1
LIMCH1-211ENST00000509638 C9JQL5 133 aa21.28■■□□□ 1
LIMCH1-211ENST00000509638 FAM162BQ5T6X4 162 aa21.28■■□□□ 1
LIMCH1-211ENST00000509638 FAM159AQ6UWV7 190 aa21.28■■□□□ 1
LIMCH1-211ENST00000509638 PGPEP1LA6NFU8 196 aa21.27■■□□□ 1
LIMCH1-211ENST00000509638 CRIP1P50238 77 aa21.27■■□□□ 1
LIMCH1-211ENST00000509638 TMEM189A5PLL7 270 aa21.27■□□□□ 0.99
LIMCH1-211ENST00000509638 SH2D1AO60880 128 aa21.27■□□□□ 0.99
LIMCH1-211ENST00000509638 SMDT1Q9H4I9 107 aa21.27■□□□□ 0.99
LIMCH1-211ENST00000509638 C11orf21Q9P2W6 132 aa21.27■□□□□ 0.99
LIMCH1-211ENST00000509638 TP53TG3Q9ULZ0 132 aa21.27■□□□□ 0.99
LIMCH1-211ENST00000509638 C9JCJ5 164 aa21.26■□□□□ 0.99
LIMCH1-211ENST00000509638 IGLV2-8P01709 118 aa21.26■□□□□ 0.99
LIMCH1-211ENST00000509638 ANXA2RQ3ZCQ2 193 aa21.26■□□□□ 0.99
LIMCH1-211ENST00000509638 PRR27Q6MZM9 219 aa21.26■□□□□ 0.99
LIMCH1-211ENST00000509638 ZNF493Q6ZR52 646 aa21.26■□□□□ 0.99
LIMCH1-211ENST00000509638 SMIM12Q96EX1 92 aa21.26■□□□□ 0.99
LIMCH1-211ENST00000509638 PLAC8L1A1L4L8 177 aa21.25■□□□□ 0.99
LIMCH1-211ENST00000509638 FABP5P3A8MUU1 101 aa21.25■□□□□ 0.99
LIMCH1-211ENST00000509638 MGST1P10620 155 aaKnown RBP21.25■□□□□ 0.99
LIMCH1-211ENST00000509638 TDRG1Q3Y452 100 aa21.25■□□□□ 0.99
LIMCH1-211ENST00000509638 SMIM7Q9BQ49 75 aa21.25■□□□□ 0.99
LIMCH1-211ENST00000509638 DNAH7Q8WXX0 4024 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms